Wall clock time and date at job start Mon Mar 30 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99950 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99943 * 3 2 1 7 7 C 1.38946 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00006 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00384 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00039 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00386 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 H 1.08994 * 110.43414 * 59.29862 * 12 10 9 14 14 C 1.54625 * 110.48713 * 181.84386 * 12 10 9 15 15 C 1.54475 * 101.76872 * 93.87885 * 14 12 10 16 16 N 1.46768 * 105.47285 * 25.41624 * 15 14 12 17 17 C 1.34746 * 111.34988 * 343.01961 * 16 15 14 18 18 O 1.21280 * 125.12256 * 180.39029 * 17 16 15 19 19 H 0.96993 * 119.99996 * 180.02562 * 1 2 3 20 20 H 0.96992 * 119.99458 * 359.97438 * 9 7 2 21 21 H 1.08993 * 110.97271 * 212.00024 * 14 12 10 22 22 H 1.09004 * 110.96973 * 335.72751 * 14 12 10 23 23 H 1.08999 * 110.24930 * 144.41489 * 15 14 12 24 24 H 1.09004 * 110.24792 * 266.41796 * 15 14 12 25 25 H 0.96999 * 124.35346 * 162.97158 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1019 1.6964 -1.2125 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0011 13 1 0.6015 -4.9320 -0.8768 14 6 2.2269 -6.0555 0.0476 15 6 2.3069 -6.3390 1.5640 16 7 1.0451 -5.8393 2.1228 17 6 0.4269 -5.0022 1.2669 18 8 -0.6277 -4.4417 1.4782 19 1 -0.4850 -0.8400 0.0004 20 1 0.3534 -2.3906 0.0005 21 1 1.8240 -6.9144 -0.4890 22 1 3.2021 -5.7727 -0.3488 23 1 2.4007 -7.4100 1.7431 24 1 3.1508 -5.8070 2.0033 25 1 0.6995 -6.0811 2.9964 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464725944.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:38 Heat of formation + Delta-G solvation = -77.484207 kcal Electronic energy + Delta-G solvation = -12657.744607 eV Core-core repulsion = 10249.943144 eV Total energy + Delta-G solvation = -2407.801463 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.30849 -37.77987 -36.04594 -34.28141 -31.36071 -30.76888 -27.63776 -24.60929 -22.00944 -21.06634 -19.24839 -17.89901 -17.17915 -17.01242 -15.09840 -14.73074 -14.63750 -13.81689 -13.76157 -13.36970 -12.89139 -12.76795 -12.35801 -11.34413 -11.14184 -11.06573 -10.91804 -10.19444 -9.87160 -9.66173 -9.53932 -8.94958 -8.53323 -8.06128 -6.76447 -3.89912 2.77232 3.29074 3.35040 3.50318 3.56178 3.80500 4.24557 4.61691 4.70130 4.80461 5.13547 5.27655 5.41650 5.60225 5.81022 6.00587 6.11171 6.32031 6.95721 7.13993 7.76648 8.06424 8.44911 8.57497 8.74061 9.45525 9.80985 10.66409 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.055724 B = 0.010416 C = 0.009395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.357218 B = 2687.545768 C = 2979.585086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C -0.007 4.007 3 Si 1.094 2.906 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.389 4.389 8 H 0.101 0.899 9 N -0.556 5.556 10 C 0.448 3.552 11 O -0.586 6.586 12 C -0.141 4.141 13 H 0.115 0.885 14 C -0.116 4.116 15 C 0.105 3.895 16 N -0.734 5.734 17 C 0.530 3.470 18 O -0.527 6.527 19 H 0.266 0.734 20 H 0.383 0.617 21 H 0.079 0.921 22 H 0.108 0.892 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 -10.879 1.384 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.211 4.211 3 Si 0.919 3.081 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.518 4.518 8 H 0.119 0.881 9 N -0.192 5.192 10 C 0.233 3.767 11 O -0.472 6.472 12 C -0.166 4.166 13 H 0.133 0.867 14 C -0.154 4.154 15 C -0.019 4.019 16 N -0.390 5.390 17 C 0.316 3.684 18 O -0.402 6.402 19 H 0.078 0.922 20 H 0.217 0.783 21 H 0.097 0.903 22 H 0.127 0.873 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.612 -8.845 1.373 9.324 hybrid contribution -0.551 -1.942 0.415 2.060 sum 2.061 -10.787 1.788 11.126 Atomic orbital electron populations 1.70840 1.06586 1.30034 1.45328 1.26624 0.96537 1.02814 0.95103 0.83114 0.74421 0.73464 0.77079 1.20298 1.20873 1.20946 1.20591 0.94717 0.83789 1.52697 0.88095 1.41982 1.08850 1.05405 1.62937 1.18891 0.87764 0.83683 0.86326 1.90498 1.13208 1.86372 1.57084 1.22037 0.98797 0.97485 0.98298 0.86695 1.22499 1.01790 0.95838 0.95236 1.22058 0.86309 0.99068 0.94510 1.46209 1.23900 1.48803 1.20069 1.20705 0.84325 0.77479 0.85899 1.90756 1.22271 1.47870 1.79341 0.92202 0.78288 0.90266 0.87326 0.90572 0.90656 0.75491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.68 55.50 0.76 -25.40 15 2 C -0.01 -0.19 5.50 -17.47 -0.10 -0.28 15 3 Si 1.09 24.64 29.92 -169.99 -5.09 19.56 15 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 7 C -0.39 -11.27 9.68 -14.93 -0.14 -11.42 15 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 15 9 N -0.56 -14.94 5.24 -10.96 -0.06 -15.00 15 10 C 0.45 10.89 7.13 -10.98 -0.08 10.82 15 11 O -0.59 -15.59 15.04 5.55 0.08 -15.51 15 12 C -0.14 -2.61 3.32 -91.78 -0.30 -2.91 15 13 H 0.12 1.93 8.14 -51.93 -0.42 1.51 15 14 C -0.12 -1.63 6.51 -25.10 -0.16 -1.79 15 15 C 0.10 1.32 7.78 -3.12 -0.02 1.30 15 16 N -0.73 -10.77 6.25 -59.12 -0.37 -11.14 15 17 C 0.53 10.08 7.73 -10.71 -0.08 10.00 15 18 O -0.53 -11.87 17.99 5.56 0.10 -11.77 15 19 H 0.27 7.78 6.77 -40.82 -0.28 7.50 15 20 H 0.38 10.13 6.69 -40.82 -0.27 9.85 15 21 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.11 1.68 6.94 -51.93 -0.36 1.32 15 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 15 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.41 4.99 8.96 -40.82 -0.37 4.62 15 LS Contribution 226.18 15.07 3.41 3.41 Total: -1.00 -34.40 226.18 -4.19 -38.59 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -2.14 Total: 11.55 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.89 Total: 5.71 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.33 Total: -51.53 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: 0.18 Total: -27.28 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.09 Total: 19.56 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -34.40 -4.19 -38.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464725944.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.892 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds