Wall clock time and date at job start Mon Mar 30 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99950 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99943 * 3 2 1 7 7 C 1.38946 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00006 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00384 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00039 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00386 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 H 1.08994 * 110.43414 * 59.29862 * 12 10 9 14 14 C 1.54625 * 110.48713 * 181.84386 * 12 10 9 15 15 C 1.54475 * 101.76872 * 93.87885 * 14 12 10 16 16 N 1.46768 * 105.47285 * 25.41624 * 15 14 12 17 17 C 1.34746 * 111.34988 * 343.01961 * 16 15 14 18 18 O 1.21280 * 125.12256 * 180.39029 * 17 16 15 19 19 H 0.96993 * 119.99996 * 180.02562 * 1 2 3 20 20 H 0.96992 * 119.99458 * 359.97438 * 9 7 2 21 21 H 1.08993 * 110.97271 * 212.00024 * 14 12 10 22 22 H 1.09004 * 110.96973 * 335.72751 * 14 12 10 23 23 H 1.08999 * 110.24930 * 144.41489 * 15 14 12 24 24 H 1.09004 * 110.24792 * 266.41796 * 15 14 12 25 25 H 0.96999 * 124.35346 * 162.97158 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1019 1.6964 -1.2125 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0011 13 1 0.6015 -4.9320 -0.8768 14 6 2.2269 -6.0555 0.0476 15 6 2.3069 -6.3390 1.5640 16 7 1.0451 -5.8393 2.1228 17 6 0.4269 -5.0022 1.2669 18 8 -0.6277 -4.4417 1.4782 19 1 -0.4850 -0.8400 0.0004 20 1 0.3534 -2.3906 0.0005 21 1 1.8240 -6.9144 -0.4890 22 1 3.2021 -5.7727 -0.3488 23 1 2.4007 -7.4100 1.7431 24 1 3.1508 -5.8070 2.0033 25 1 0.6995 -6.0811 2.9964 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464725944.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:38 Heat of formation + Delta-G solvation = -105.994466 kcal Electronic energy + Delta-G solvation = -12658.980905 eV Core-core repulsion = 10249.943144 eV Total energy + Delta-G solvation = -2409.037761 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.82828 -39.67622 -37.53263 -36.34272 -33.30668 -32.32293 -29.00400 -26.64803 -23.50847 -22.49556 -20.97990 -19.99731 -18.75639 -18.51645 -16.79479 -16.60579 -16.26332 -15.54835 -15.35186 -14.72124 -14.60912 -14.47117 -13.66185 -13.40608 -12.84365 -12.43048 -12.26882 -11.93956 -11.91032 -11.57763 -11.16489 -10.57756 -10.20303 -10.13882 -9.00440 -6.15424 1.20449 1.50768 1.53016 1.82117 1.87764 2.34503 2.41318 2.92107 3.08681 3.38504 3.48568 3.87825 4.14250 4.27481 4.50673 4.72133 5.01281 5.16855 5.52914 5.70110 5.84197 5.88962 6.43679 6.61937 7.09720 7.34221 7.75135 8.44915 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.055724 B = 0.010416 C = 0.009395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.357218 B = 2687.545768 C = 2979.585086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.045 4.045 3 Si 1.140 2.860 4 H -0.274 1.274 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.417 4.417 8 H 0.084 0.916 9 N -0.577 5.577 10 C 0.453 3.547 11 O -0.610 6.610 12 C -0.142 4.142 13 H 0.132 0.868 14 C -0.108 4.108 15 C 0.103 3.897 16 N -0.715 5.715 17 C 0.522 3.478 18 O -0.571 6.571 19 H 0.256 0.744 20 H 0.382 0.618 21 H 0.124 0.876 22 H 0.095 0.905 23 H 0.130 0.870 24 H 0.063 0.937 25 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -12.367 1.557 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.243 4.243 3 Si 0.958 3.042 4 H -0.198 1.198 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.545 4.545 8 H 0.102 0.898 9 N -0.214 5.214 10 C 0.239 3.761 11 O -0.496 6.496 12 C -0.167 4.167 13 H 0.150 0.850 14 C -0.146 4.146 15 C -0.020 4.020 16 N -0.370 5.370 17 C 0.307 3.693 18 O -0.451 6.451 19 H 0.066 0.934 20 H 0.216 0.784 21 H 0.142 0.858 22 H 0.113 0.887 23 H 0.148 0.852 24 H 0.082 0.918 25 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.418 -10.403 1.566 11.061 hybrid contribution -0.724 -1.639 0.373 1.830 sum 2.694 -12.042 1.939 12.491 Atomic orbital electron populations 1.70946 1.07362 1.29439 1.47236 1.28142 0.96556 1.05969 0.93661 0.82592 0.73748 0.69591 0.78276 1.19826 1.19021 1.19517 1.20676 0.94249 0.85377 1.54240 0.89757 1.42137 1.08806 1.05895 1.64532 1.19909 0.87836 0.84971 0.83340 1.90476 1.14651 1.87329 1.57188 1.22088 0.99734 0.95655 0.99223 0.85019 1.22620 0.99962 0.95120 0.96881 1.22317 0.84524 1.02047 0.93161 1.46186 1.23832 1.46978 1.19991 1.20797 0.84019 0.77858 0.86592 1.90734 1.24324 1.49818 1.80177 0.93351 0.78383 0.85786 0.88662 0.85178 0.91849 0.73881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.56 13.68 21.66 0.30 -54.26 15 2 C -0.04 -2.55 5.50 84.93 0.47 -2.09 15 3 Si 1.14 49.49 29.92 68.60 2.05 51.54 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 7 C -0.42 -24.71 9.68 84.04 0.81 -23.89 15 8 H 0.08 5.18 7.16 -2.91 -0.02 5.16 15 9 N -0.58 -31.73 5.24 -306.98 -1.61 -33.33 15 10 C 0.45 22.05 7.13 87.66 0.62 22.68 15 11 O -0.61 -32.55 15.04 -3.07 -0.05 -32.59 15 12 C -0.14 -5.05 3.32 -11.55 -0.04 -5.08 15 13 H 0.13 4.21 8.14 -2.39 -0.02 4.19 15 14 C -0.11 -2.67 6.51 31.65 0.21 -2.46 15 15 C 0.10 2.19 7.78 86.83 0.68 2.86 15 16 N -0.71 -19.01 6.25 -459.36 -2.87 -21.88 15 17 C 0.52 19.19 7.73 87.85 0.68 19.87 15 18 O -0.57 -25.81 17.99 -3.03 -0.05 -25.86 15 19 H 0.26 15.42 6.77 -92.71 -0.63 14.79 15 20 H 0.38 20.91 6.69 -92.71 -0.62 20.29 15 21 H 0.12 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.09 2.70 6.94 -2.38 -0.02 2.68 15 23 H 0.13 1.51 8.14 -2.39 -0.02 1.49 15 24 H 0.06 1.56 8.14 -2.38 -0.02 1.54 15 25 H 0.42 9.12 8.96 -92.71 -0.83 8.29 15 Total: -1.00 -76.42 226.18 1.12 -75.29 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.07 Total: 29.22 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 3.43 Total: 11.88 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.18 Total: -109.48 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -0.10 Total: -58.46 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.05 Total: 51.54 kcal Total: -76.42 1.12 -75.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464725944.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.702 kcal (2) G-P(sol) polarization free energy of solvation -76.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds