Wall clock time and date at job start Mon Mar 30 2020 02:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 N 1.46904 * 109.46891 * 180.02562 * 9 7 2 11 11 C 1.46846 * 110.99830 * 294.21063 * 10 9 7 12 12 C 1.53043 * 109.52316 * 174.15876 * 11 10 9 13 13 C 1.53123 * 109.27351 * 59.17840 * 12 11 10 14 14 C 1.53003 * 109.57265 * 182.40978 * 13 12 11 15 15 N 1.46905 * 109.46975 * 294.71670 * 14 13 12 16 16 C 1.53112 * 109.16291 * 302.34639 * 13 12 11 17 17 C 1.46850 * 111.00104 * 170.00174 * 10 9 7 18 18 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 20 20 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 21 21 H 1.08996 * 109.46465 * 294.17489 * 11 10 9 22 22 H 1.08998 * 109.46421 * 54.14901 * 11 10 9 23 23 H 1.08999 * 109.50530 * 299.24210 * 12 11 10 24 24 H 1.08996 * 109.50505 * 179.12322 * 12 11 10 25 25 H 1.09000 * 109.52167 * 62.25635 * 13 12 11 26 26 H 1.09007 * 109.47265 * 54.71383 * 14 13 12 27 27 H 1.08992 * 109.47376 * 174.72014 * 14 13 12 28 28 H 1.00901 * 110.99840 * 56.04905 * 15 14 13 29 29 H 1.00908 * 110.99475 * 179.97438 * 15 14 13 30 30 H 1.09007 * 109.50366 * 297.71209 * 16 13 12 31 31 H 1.09001 * 109.50045 * 177.59880 * 16 13 12 32 32 H 1.08997 * 109.46202 * 305.85771 * 17 10 9 33 33 H 1.09006 * 109.45940 * 65.83231 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 7 4.0012 -2.5790 -0.0045 11 6 3.6518 -3.2595 1.2490 12 6 4.0471 -4.7352 1.1572 13 6 5.5529 -4.8401 0.9002 14 6 5.9456 -6.3109 0.7475 15 7 5.7260 -7.0111 2.0201 16 6 5.8974 -4.0824 -0.3849 17 6 5.4486 -2.6257 -0.2484 18 1 -0.4850 0.8401 0.0004 19 1 3.8712 -0.6827 -0.8987 20 1 3.8785 -0.6777 0.8813 21 1 4.1845 -2.7917 2.0769 22 1 2.5778 -3.1812 1.4177 23 1 3.5044 -5.2071 0.3381 24 1 3.8018 -5.2366 2.0935 25 1 6.0967 -4.4030 1.7377 26 1 5.3359 -6.7710 -0.0302 27 1 6.9980 -6.3793 0.4721 28 1 4.7713 -6.9075 2.3297 29 1 5.9778 -7.9853 1.9449 30 1 5.3839 -4.5440 -1.2283 31 1 6.9742 -4.1174 -0.5504 32 1 5.6795 -2.0869 -1.1673 33 1 5.9728 -2.1610 0.5867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015781972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:13 Heat of formation + Delta-G solvation = -34.857118 kcal Electronic energy + Delta-G solvation = -13015.389343 eV Core-core repulsion = 10881.102519 eV Total energy + Delta-G solvation = -2134.286825 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.08365 -36.73463 -34.76426 -32.95508 -31.69179 -29.60113 -26.41778 -24.26095 -23.31139 -21.99596 -20.52868 -18.94077 -17.14468 -16.62569 -16.19483 -15.88732 -15.61448 -15.02320 -14.85239 -14.48651 -14.29803 -13.75472 -13.40799 -13.15576 -12.92142 -12.47584 -12.32254 -12.09702 -11.87598 -11.65564 -11.52899 -11.17198 -10.99056 -10.78639 -9.56412 -9.01460 -8.30064 -6.33520 1.33241 1.34748 1.45653 2.32990 3.02625 3.23813 3.64490 3.88097 3.91720 4.10932 4.35406 4.41941 4.53379 4.61459 4.69955 4.73795 4.82662 4.90940 4.94828 5.07480 5.11115 5.17777 5.25468 5.29116 5.51295 5.55073 6.00118 6.27208 6.40012 6.63556 6.67599 6.72769 7.30260 8.86555 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.065766 B = 0.008084 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.650532 B = 3462.710926 C = 3720.865206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.518 4.518 8 H 0.037 0.963 9 C 0.170 3.830 10 N -0.544 5.544 11 C 0.066 3.934 12 C -0.101 4.101 13 C -0.082 4.082 14 C 0.074 3.926 15 N -0.860 5.860 16 C -0.101 4.101 17 C 0.049 3.951 18 H 0.267 0.733 19 H 0.029 0.971 20 H -0.016 1.016 21 H 0.017 0.983 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.343 0.657 29 H 0.350 0.650 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.694 -9.795 1.482 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.556 4.556 8 H 0.055 0.945 9 C 0.043 3.957 10 N -0.269 5.269 11 C -0.062 4.062 12 C -0.139 4.139 13 C -0.101 4.101 14 C -0.056 4.056 15 N -0.391 5.391 16 C -0.139 4.139 17 C -0.079 4.079 18 H 0.076 0.924 19 H 0.047 0.953 20 H 0.001 0.999 21 H 0.035 0.965 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 13.868 -9.442 1.390 16.834 hybrid contribution -0.738 0.834 0.110 1.119 sum 13.129 -8.607 1.500 15.771 Atomic orbital electron populations 1.70049 1.08086 1.28149 1.52534 1.25860 0.95638 1.03161 0.94303 0.85694 0.79187 0.78574 0.79354 1.18769 1.20541 1.17863 1.21264 0.91069 0.93274 1.49979 0.94455 1.19932 0.94316 0.86683 0.94788 1.61800 1.13480 1.16602 1.34982 1.21899 0.99780 0.95058 0.89455 1.21592 0.96399 0.94289 1.01661 1.21173 0.95093 0.95855 0.97954 1.21728 1.01082 0.92546 0.90281 1.58769 1.30514 1.18653 1.31158 1.21552 1.01370 0.93298 0.97671 1.22193 0.87294 0.98329 1.00113 0.92372 0.95340 0.99881 0.96485 0.93180 0.92364 0.90528 0.91538 0.95254 0.90136 0.84406 0.83697 0.91613 0.89272 0.90978 0.95813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 2 C 0.01 0.46 5.47 84.66 0.46 0.92 16 3 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 7 C -0.52 -30.80 8.98 25.60 0.23 -30.57 16 8 H 0.04 2.47 7.37 -2.92 -0.02 2.45 16 9 C 0.17 8.48 3.79 85.56 0.32 8.81 16 10 N -0.54 -23.33 4.65 -900.92 -4.19 -27.51 16 11 C 0.07 2.65 5.30 86.33 0.46 3.11 16 12 C -0.10 -3.06 5.10 30.65 0.16 -2.90 16 13 C -0.08 -2.07 2.46 -10.71 -0.03 -2.09 16 14 C 0.07 1.48 6.25 86.30 0.54 2.02 16 15 N -0.86 -15.96 9.62 -186.71 -1.80 -17.75 16 16 C -0.10 -2.61 5.38 30.64 0.16 -2.45 16 17 C 0.05 1.63 5.46 86.32 0.47 2.10 16 18 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 19 H 0.03 1.39 7.42 -2.39 -0.02 1.37 16 20 H -0.02 -0.83 7.17 -2.39 -0.02 -0.84 16 21 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.05 2.34 6.70 -2.39 -0.02 2.32 16 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.08 2.02 6.81 -2.39 -0.02 2.01 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.34 6.30 7.32 -89.69 -0.66 5.64 16 29 H 0.35 4.95 9.08 -89.69 -0.81 4.13 16 30 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 2.32 8.01 -2.39 -0.02 2.30 16 33 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -67.07 257.97 -1.46 -68.53 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -0.44 Total: 10.83 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 2.78 Total: -21.06 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -5.68 Total: -105.05 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -67.07 -1.46 -68.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015781972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.671 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds