Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46839 * 111.00175 * 45.79285 * 11 10 9 13 13 C 1.53038 * 109.52321 * 185.83828 * 12 11 10 14 14 C 1.53111 * 109.28032 * 300.82001 * 13 12 11 15 15 N 1.46901 * 109.57913 * 177.59273 * 14 13 12 16 16 C 1.53117 * 109.16032 * 57.65459 * 14 13 12 17 17 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 18 18 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 21 21 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 22 22 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 23 23 H 1.09000 * 109.46389 * 305.85096 * 12 11 10 24 24 H 1.08998 * 109.46466 * 65.81826 * 12 11 10 25 25 H 1.09001 * 109.50415 * 180.87699 * 13 12 11 26 26 H 1.09005 * 109.50244 * 60.76180 * 13 12 11 27 27 H 1.09006 * 109.52471 * 297.75264 * 14 13 12 28 28 H 1.00894 * 110.99842 * 60.28262 * 15 14 13 29 29 H 1.00901 * 110.99939 * 184.24299 * 15 14 13 30 30 H 1.09006 * 109.50431 * 182.40729 * 16 14 13 31 31 H 1.08996 * 109.50401 * 62.28603 * 16 14 13 32 32 H 1.08992 * 109.46356 * 294.17825 * 17 11 10 33 33 H 1.09007 * 109.46137 * 54.15905 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.4204 -4.9118 -0.9842 13 6 -0.4100 -6.1910 -0.8561 14 6 0.4919 -7.4051 -1.0943 15 7 -0.2858 -8.6386 -0.9163 16 6 1.6464 -7.3785 -0.0889 17 6 2.4172 -6.0650 -0.2392 18 1 -0.4851 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8904 20 1 0.6248 -2.5571 0.8896 21 1 2.8721 -3.6042 -0.8905 22 1 2.8721 -3.6043 0.8895 23 1 -0.2160 -4.0460 -0.8010 24 1 0.8383 -4.8491 -1.9889 25 1 -1.2100 -6.1811 -1.5964 26 1 -0.8396 -6.2474 0.1441 27 1 0.8910 -7.3692 -2.1081 28 1 -1.0539 -8.6791 -1.5692 29 1 0.3037 -9.4531 -1.0004 30 1 2.3157 -8.2172 -0.2810 31 1 1.2492 -7.4536 0.9234 32 1 2.8258 -5.9969 -1.2474 33 1 3.2312 -6.0367 0.4853 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036754201.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = -12.310771 kcal Electronic energy + Delta-G solvation = -12881.601519 eV Core-core repulsion = 10748.292377 eV Total energy + Delta-G solvation = -2133.309142 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.81005 -35.22065 -32.97892 -30.85691 -30.42703 -28.16122 -24.45312 -23.15209 -22.20346 -20.03310 -19.22651 -16.53520 -15.50751 -15.28736 -14.97327 -14.58919 -14.40838 -13.93492 -12.99669 -12.78715 -12.63914 -12.18590 -11.72674 -11.17433 -11.07715 -10.91081 -10.85452 -10.53215 -10.36046 -10.17760 -9.84702 -9.28182 -9.04423 -8.71316 -8.33651 -7.64336 -5.99706 -4.01877 3.31574 3.38966 3.43097 4.38767 4.47001 4.60579 4.96304 5.08606 5.36374 5.38402 5.53406 5.68286 5.84008 5.86353 6.00119 6.03000 6.17571 6.35622 6.37721 6.44134 6.58919 6.67212 6.95445 7.14921 7.39315 7.55302 7.65513 7.82929 7.87616 8.06698 8.44184 9.05074 9.61885 11.11811 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.080117 B = 0.006940 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.404739 B = 4033.366588 C = 4293.584439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C 0.062 3.938 11 N -0.538 5.538 12 C 0.052 3.948 13 C -0.108 4.108 14 C 0.089 3.911 15 N -0.847 5.847 16 C -0.107 4.107 17 C 0.056 3.944 18 H 0.260 0.740 19 H 0.020 0.980 20 H 0.025 0.975 21 H 0.018 0.982 22 H 0.062 0.938 23 H 0.096 0.904 24 H 0.023 0.977 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.027 0.973 28 H 0.338 0.662 29 H 0.336 0.664 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 -13.528 -2.950 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.077 4.077 13 C -0.146 4.146 14 C -0.022 4.022 15 N -0.376 5.376 16 C -0.145 4.145 17 C -0.073 4.073 18 H 0.070 0.930 19 H 0.038 0.962 20 H 0.044 0.956 21 H 0.036 0.964 22 H 0.081 0.919 23 H 0.115 0.885 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.045 0.955 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.932 -13.193 -1.755 13.342 hybrid contribution 1.130 0.832 -1.855 2.326 sum 2.062 -12.361 -3.610 13.042 Atomic orbital electron populations 1.69971 1.06032 1.26505 1.50830 1.24993 0.94835 0.99209 0.95297 0.86535 0.80094 0.83785 0.77576 1.19768 1.21059 1.20950 1.21232 0.93052 0.91016 1.50651 0.92706 1.19259 0.94145 0.90534 0.97808 1.22314 0.97011 0.88196 0.98928 1.62039 1.11566 1.03499 1.49229 1.22178 0.94209 0.98340 0.92925 1.21624 0.97221 0.92971 1.02802 1.21424 0.94001 0.90253 0.96516 1.58736 1.14499 1.04036 1.60332 1.21590 0.95960 0.96372 1.00621 1.22026 0.95179 0.91088 0.99008 0.93034 0.96152 0.95614 0.96357 0.91918 0.88538 0.95856 0.92337 0.90357 0.95477 0.84962 0.85183 0.92547 0.90321 0.95805 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.52 4.22 -27.88 -0.12 0.40 16 10 C 0.06 1.36 5.21 -3.82 -0.02 1.34 16 11 N -0.54 -10.23 4.81 -234.67 -1.13 -11.36 16 12 C 0.05 0.94 4.85 -3.84 -0.02 0.92 16 13 C -0.11 -1.62 5.68 -26.65 -0.15 -1.77 16 14 C 0.09 1.16 3.31 -67.59 -0.22 0.94 16 15 N -0.85 -9.27 9.25 -4.56 -0.04 -9.31 16 16 C -0.11 -1.44 5.64 -26.65 -0.15 -1.59 16 17 C 0.06 0.87 5.42 -3.83 -0.02 0.85 16 18 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 19 H 0.02 0.56 6.21 -51.93 -0.32 0.23 16 20 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 22 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 23 H 0.10 1.99 5.81 -51.93 -0.30 1.69 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.34 3.20 9.04 -39.30 -0.36 2.85 16 29 H 0.34 3.05 8.99 -39.29 -0.35 2.70 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 LS Contribution 262.69 15.07 3.96 3.96 Total: -1.00 -30.12 262.69 -8.13 -38.25 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.52 Total: 0.52 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.11 Total: -12.55 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.43 Total: -46.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.12 -8.13 -38.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036754201.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.940 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds