Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46839 * 111.00175 * 45.79285 * 11 10 9 13 13 C 1.53038 * 109.52321 * 185.83828 * 12 11 10 14 14 C 1.53111 * 109.28032 * 300.82001 * 13 12 11 15 15 N 1.46901 * 109.57913 * 177.59273 * 14 13 12 16 16 C 1.53117 * 109.16032 * 57.65459 * 14 13 12 17 17 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 18 18 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 21 21 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 22 22 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 23 23 H 1.09000 * 109.46389 * 305.85096 * 12 11 10 24 24 H 1.08998 * 109.46466 * 65.81826 * 12 11 10 25 25 H 1.09001 * 109.50415 * 180.87699 * 13 12 11 26 26 H 1.09005 * 109.50244 * 60.76180 * 13 12 11 27 27 H 1.09006 * 109.52471 * 297.75264 * 14 13 12 28 28 H 1.00894 * 110.99842 * 60.28262 * 15 14 13 29 29 H 1.00901 * 110.99939 * 184.24299 * 15 14 13 30 30 H 1.09006 * 109.50431 * 182.40729 * 16 14 13 31 31 H 1.08996 * 109.50401 * 62.28603 * 16 14 13 32 32 H 1.08992 * 109.46356 * 294.17825 * 17 11 10 33 33 H 1.09007 * 109.46137 * 54.15905 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.4204 -4.9118 -0.9842 13 6 -0.4100 -6.1910 -0.8561 14 6 0.4919 -7.4051 -1.0943 15 7 -0.2858 -8.6386 -0.9163 16 6 1.6464 -7.3785 -0.0889 17 6 2.4172 -6.0650 -0.2392 18 1 -0.4851 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8904 20 1 0.6248 -2.5571 0.8896 21 1 2.8721 -3.6042 -0.8905 22 1 2.8721 -3.6043 0.8895 23 1 -0.2160 -4.0460 -0.8010 24 1 0.8383 -4.8491 -1.9889 25 1 -1.2100 -6.1811 -1.5964 26 1 -0.8396 -6.2474 0.1441 27 1 0.8910 -7.3692 -2.1081 28 1 -1.0539 -8.6791 -1.5692 29 1 0.3037 -9.4531 -1.0004 30 1 2.3157 -8.2172 -0.2810 31 1 1.2492 -7.4536 0.9234 32 1 2.8258 -5.9969 -1.2474 33 1 3.2312 -6.0367 0.4853 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036754201.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = -34.807515 kcal Electronic energy + Delta-G solvation = -12882.577051 eV Core-core repulsion = 10748.292377 eV Total energy + Delta-G solvation = -2134.284674 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.15534 -36.63610 -34.95862 -32.40068 -31.76593 -29.78303 -26.33937 -24.61163 -23.59096 -21.70145 -20.53538 -18.64649 -16.72700 -16.62038 -16.39766 -16.13747 -15.89204 -15.49316 -14.50154 -14.43528 -14.09135 -13.84776 -13.14207 -12.99628 -12.89866 -12.40444 -12.36054 -12.14505 -11.89508 -11.73612 -11.46408 -11.21326 -10.99429 -10.55060 -9.59831 -9.17600 -8.21317 -6.32778 1.39831 1.40418 1.53786 2.39780 3.06707 3.12182 3.53381 3.83158 3.90693 4.24593 4.27683 4.37472 4.46056 4.59989 4.61763 4.72562 4.86524 4.92049 4.99945 5.03426 5.12088 5.22980 5.38908 5.45107 5.65174 5.77584 6.08070 6.26663 6.32352 6.34525 6.66281 6.83965 7.36483 8.91062 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.080117 B = 0.006940 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.404739 B = 4033.366588 C = 4293.584439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.029 3.971 10 C 0.077 3.923 11 N -0.549 5.549 12 C 0.055 3.945 13 C -0.101 4.101 14 C 0.095 3.905 15 N -0.848 5.848 16 C -0.101 4.101 17 C 0.054 3.946 18 H 0.264 0.736 19 H 0.001 0.999 20 H -0.008 1.008 21 H 0.020 0.980 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.023 0.977 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.348 0.652 29 H 0.351 0.649 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -14.475 -3.388 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.050 4.050 11 N -0.274 5.274 12 C -0.074 4.074 13 C -0.139 4.139 14 C -0.016 4.016 15 N -0.380 5.380 16 C -0.139 4.139 17 C -0.075 4.075 18 H 0.073 0.927 19 H 0.019 0.981 20 H 0.010 0.990 21 H 0.038 0.962 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.087 -14.174 -2.197 14.495 hybrid contribution 0.728 1.084 -1.717 2.157 sum 2.815 -13.091 -3.914 13.950 Atomic orbital electron populations 1.70107 1.07838 1.27782 1.51487 1.25966 0.95759 1.03357 0.94558 0.85362 0.79031 0.78580 0.77830 1.18571 1.20288 1.20293 1.21657 0.93540 0.92273 1.50876 0.92200 1.19077 0.94325 0.92188 0.95241 1.21988 0.95780 0.88277 0.98991 1.62009 1.12230 1.03258 1.49947 1.22084 0.93885 0.98820 0.92603 1.21536 0.97480 0.92476 1.02428 1.21264 0.93493 0.90150 0.96708 1.58629 1.14836 1.03677 1.60856 1.21546 0.96357 0.95922 1.00048 1.22155 0.95111 0.90625 0.99570 0.92707 0.98051 0.98952 0.96210 0.91772 0.92142 0.95891 0.90869 0.91838 0.94807 0.83838 0.83563 0.89526 0.91515 0.95237 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.55 -31.72 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.58 4.22 29.85 0.13 1.71 16 10 C 0.08 3.41 5.21 86.31 0.45 3.85 16 11 N -0.55 -20.91 4.81 -896.35 -4.31 -25.22 16 12 C 0.05 2.02 4.85 86.33 0.42 2.44 16 13 C -0.10 -2.96 5.68 30.64 0.17 -2.79 16 14 C 0.10 2.26 3.31 44.99 0.15 2.41 16 15 N -0.85 -16.17 9.25 -168.35 -1.56 -17.73 16 16 C -0.10 -2.44 5.64 30.65 0.17 -2.27 16 17 C 0.05 1.58 5.42 86.33 0.47 2.05 16 18 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 19 H 0.00 0.07 6.21 -2.39 -0.01 0.06 16 20 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 21 H 0.02 0.86 8.08 -2.39 -0.02 0.84 16 22 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 23 H 0.06 2.64 5.81 -2.39 -0.01 2.63 16 24 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.35 5.63 9.04 -89.70 -0.81 4.82 16 29 H 0.35 5.17 8.99 -89.69 -0.81 4.36 16 30 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 2.23 8.12 -2.38 -0.02 2.21 16 Total: -1.00 -65.17 262.69 -1.43 -66.60 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -0.53 Total: 10.37 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 2.65 Total: -23.53 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -5.58 Total: -100.20 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.17 -1.43 -66.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036754201.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.791 kcal (2) G-P(sol) polarization free energy of solvation -65.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds