Wall clock time and date at job start Mon Mar 30 2020 02:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00350 * 2 1 4 4 H 1.08997 * 109.47312 * 29.99299 * 3 2 1 5 5 C 1.53003 * 109.46987 * 269.99892 * 3 2 1 6 6 C 1.53002 * 109.47436 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46798 * 59.99750 * 6 5 3 8 8 C 1.52999 * 109.47523 * 300.00008 * 7 6 5 9 9 H 1.08994 * 109.47023 * 300.00746 * 8 7 6 10 10 C 1.52998 * 109.47523 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.46700 * 65.00024 * 10 8 7 12 12 H 1.07999 * 120.00803 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99889 * 180.02562 * 11 10 8 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.53001 * 109.47509 * 149.99724 * 3 2 1 20 20 H 1.08999 * 109.47125 * 60.00066 * 1 2 3 21 21 H 1.08998 * 109.47692 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47199 * 300.00590 * 1 2 3 23 23 H 1.09004 * 109.47213 * 300.00096 * 5 3 2 24 24 H 1.09002 * 109.47065 * 59.99924 * 5 3 2 25 25 H 1.08993 * 109.47250 * 179.97438 * 6 5 3 26 26 H 1.09001 * 109.46628 * 300.00318 * 6 5 3 27 27 H 1.09008 * 109.47095 * 179.97438 * 7 6 5 28 28 H 1.09004 * 109.47527 * 60.00606 * 7 6 5 29 29 H 1.09004 * 109.47139 * 305.00400 * 10 8 7 30 30 H 1.08997 * 109.47675 * 185.00000 * 10 8 7 31 31 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.46667 * 59.99918 * 19 3 2 33 33 H 1.08993 * 109.47078 * 299.99816 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2177 1.7712 -1.4425 6 6 2.8395 3.1692 -1.4427 7 6 4.1881 3.1275 -0.7212 8 6 3.9807 2.6617 0.7214 9 1 3.3150 3.3554 1.2349 10 6 5.3293 2.6194 1.4426 11 6 5.8851 4.0160 1.5507 12 1 5.3316 4.8504 1.1458 13 6 7.1003 4.2287 2.1664 14 7 7.5852 5.4475 2.2612 15 14 8.0580 2.7855 2.8661 16 1 8.9630 2.2395 1.8229 17 1 7.1112 1.7281 3.3028 18 1 8.8613 3.2416 4.0289 19 6 3.3589 1.2632 0.7213 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 2.8830 1.0772 -1.9564 24 1 1.2569 1.8013 -1.9564 25 1 2.9878 3.5008 -2.4703 26 1 2.1739 3.8629 -0.9289 27 1 4.6314 4.1234 -0.7216 28 1 4.8538 2.4338 -1.2348 29 1 6.0230 1.9949 0.8797 30 1 5.1945 2.2038 2.4412 31 1 8.4402 5.5971 2.6940 32 1 4.0241 0.5692 0.2075 33 1 3.2111 0.9314 1.7489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039089610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:59 Heat of formation + Delta-G solvation = -80.117577 kcal Electronic energy + Delta-G solvation = -13018.272660 eV Core-core repulsion = 10849.730443 eV Total energy + Delta-G solvation = -2168.542217 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.99137 -36.44771 -33.08950 -31.30650 -29.78428 -27.15392 -26.33796 -22.84663 -21.97982 -20.23347 -19.15069 -16.71032 -16.18743 -15.39215 -14.98389 -14.31206 -13.93172 -13.77470 -13.08373 -12.82849 -12.40270 -12.19729 -11.77827 -11.57421 -11.36122 -10.77832 -10.68313 -10.50648 -10.47013 -10.10715 -9.73612 -9.68618 -9.56977 -9.03722 -8.98743 -8.49643 -6.00608 -3.97556 3.33811 3.41236 3.45906 3.90094 4.49068 5.02093 5.08078 5.29983 5.33437 5.35684 5.40131 5.57718 5.61324 5.73218 5.84641 5.93887 5.97699 6.07317 6.22294 6.35037 6.48359 6.58523 6.68567 6.91681 6.93922 7.11028 7.33985 7.38714 7.49983 7.84285 8.58352 9.04573 9.62642 11.12722 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053535 B = 0.008493 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.894110 B = 3296.115859 C = 3633.429658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.089 3.911 4 H 0.057 0.943 5 C -0.136 4.136 6 C -0.118 4.118 7 C -0.108 4.108 8 C -0.068 4.068 9 H 0.062 0.938 10 C -0.009 4.009 11 C -0.514 4.514 12 H 0.073 0.927 13 C 0.065 3.935 14 N -0.906 5.906 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.265 1.265 18 H -0.289 1.289 19 C -0.112 4.112 20 H 0.037 0.963 21 H 0.080 0.920 22 H 0.038 0.962 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 -8.228 -5.382 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C 0.032 3.968 4 H 0.075 0.925 5 C -0.174 4.174 6 C -0.156 4.156 7 C -0.146 4.146 8 C -0.087 4.087 9 H 0.081 0.919 10 C -0.047 4.047 11 C -0.552 4.552 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.705 3.295 16 H -0.204 1.204 17 H -0.190 1.190 18 H -0.215 1.215 19 C -0.150 4.150 20 H 0.056 0.944 21 H 0.098 0.902 22 H 0.057 0.943 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.364 -8.292 -5.312 15.037 hybrid contribution 0.379 -0.435 0.378 0.690 sum -10.984 -8.727 -4.934 14.872 Atomic orbital electron populations 1.22717 0.81997 1.02106 0.99674 1.87907 1.18920 1.28941 1.95095 1.22276 0.95498 0.83406 0.95644 0.92472 1.22005 1.00476 0.97966 0.96931 1.21557 0.98163 0.95491 1.00351 1.21554 0.95062 1.02805 0.95139 1.20997 0.98448 0.93256 0.95996 0.91936 1.19617 0.92119 0.97844 0.95085 1.21153 1.04503 0.92369 1.37175 0.90852 1.25030 0.97445 0.95423 0.95683 1.69917 1.19704 1.20208 1.44667 0.86809 0.80255 0.83479 0.78940 1.20372 1.19003 1.21505 1.21771 0.94041 0.99322 0.99828 0.94434 0.90162 0.94290 0.91429 0.92867 0.92345 0.92363 0.90443 0.92692 0.96969 0.96614 0.92845 0.91686 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.44 16 2 O -0.39 -5.84 10.35 -35.23 -0.36 -6.20 16 3 C 0.09 1.35 2.61 -26.73 -0.07 1.28 16 4 H 0.06 0.83 7.79 -51.93 -0.40 0.42 16 5 C -0.14 -1.91 5.54 -26.73 -0.15 -2.06 16 6 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 7 C -0.11 -1.99 5.01 -26.73 -0.13 -2.12 16 8 C -0.07 -1.35 2.14 -90.59 -0.19 -1.55 16 9 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 10 C -0.01 -0.22 3.51 -27.88 -0.10 -0.32 16 11 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 12 H 0.07 2.20 7.30 -52.49 -0.38 1.82 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.91 -28.01 13.96 55.43 0.77 -27.23 16 15 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 C -0.11 -1.94 4.86 -26.70 -0.13 -2.07 16 20 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.66 7.87 -51.93 -0.41 0.25 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.59 6.95 -51.92 -0.36 1.23 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 261.45 15.07 3.94 3.94 Total: -1.00 -30.25 261.45 -6.27 -36.52 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -5.70 Total: -4.02 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -0.24 Total: -20.33 kcal Atomic # 7 Polarization: -28.01 SS G_CDS: 0.77 Total: -27.23 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.36 Total: -6.20 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.25 -6.27 -36.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.600 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds