Wall clock time and date at job start Mon Mar 30 2020 02:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00350 * 2 1 4 4 H 1.08997 * 109.47312 * 29.99299 * 3 2 1 5 5 C 1.53003 * 109.46987 * 269.99892 * 3 2 1 6 6 C 1.53002 * 109.47436 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46798 * 59.99750 * 6 5 3 8 8 C 1.52999 * 109.47523 * 300.00008 * 7 6 5 9 9 H 1.08994 * 109.47023 * 300.00746 * 8 7 6 10 10 C 1.52998 * 109.47523 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.46700 * 65.00024 * 10 8 7 12 12 H 1.07999 * 120.00803 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99889 * 180.02562 * 11 10 8 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.53001 * 109.47509 * 149.99724 * 3 2 1 20 20 H 1.08999 * 109.47125 * 60.00066 * 1 2 3 21 21 H 1.08998 * 109.47692 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47199 * 300.00590 * 1 2 3 23 23 H 1.09004 * 109.47213 * 300.00096 * 5 3 2 24 24 H 1.09002 * 109.47065 * 59.99924 * 5 3 2 25 25 H 1.08993 * 109.47250 * 179.97438 * 6 5 3 26 26 H 1.09001 * 109.46628 * 300.00318 * 6 5 3 27 27 H 1.09008 * 109.47095 * 179.97438 * 7 6 5 28 28 H 1.09004 * 109.47527 * 60.00606 * 7 6 5 29 29 H 1.09004 * 109.47139 * 305.00400 * 10 8 7 30 30 H 1.08997 * 109.47675 * 185.00000 * 10 8 7 31 31 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.46667 * 59.99918 * 19 3 2 33 33 H 1.08993 * 109.47078 * 299.99816 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2177 1.7712 -1.4425 6 6 2.8395 3.1692 -1.4427 7 6 4.1881 3.1275 -0.7212 8 6 3.9807 2.6617 0.7214 9 1 3.3150 3.3554 1.2349 10 6 5.3293 2.6194 1.4426 11 6 5.8851 4.0160 1.5507 12 1 5.3316 4.8504 1.1458 13 6 7.1003 4.2287 2.1664 14 7 7.5852 5.4475 2.2612 15 14 8.0580 2.7855 2.8661 16 1 8.9630 2.2395 1.8229 17 1 7.1112 1.7281 3.3028 18 1 8.8613 3.2416 4.0289 19 6 3.3589 1.2632 0.7213 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 2.8830 1.0772 -1.9564 24 1 1.2569 1.8013 -1.9564 25 1 2.9878 3.5008 -2.4703 26 1 2.1739 3.8629 -0.9289 27 1 4.6314 4.1234 -0.7216 28 1 4.8538 2.4338 -1.2348 29 1 6.0230 1.9949 0.8797 30 1 5.1945 2.2038 2.4412 31 1 8.4402 5.5971 2.6940 32 1 4.0241 0.5692 0.2075 33 1 3.2111 0.9314 1.7489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039089610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:58 Heat of formation + Delta-G solvation = -98.806546 kcal Electronic energy + Delta-G solvation = -13019.083074 eV Core-core repulsion = 10849.730443 eV Total energy + Delta-G solvation = -2169.352631 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.24427 -37.74062 -35.05147 -33.06168 -31.08878 -28.94371 -27.26872 -24.66826 -23.28254 -21.70184 -20.65021 -18.87373 -17.34860 -16.61038 -16.24996 -15.96946 -15.44737 -15.15623 -14.72868 -14.31494 -14.00326 -13.58393 -13.43439 -13.00537 -12.58708 -12.49518 -12.18975 -11.94231 -11.88023 -11.73581 -11.56163 -11.24150 -11.03905 -10.93598 -10.73029 -10.28424 -8.26413 -6.28373 1.35515 1.37064 1.49100 2.37472 2.84257 3.08780 3.81607 3.87721 4.14786 4.26650 4.31433 4.43846 4.55606 4.58531 4.61946 4.67091 4.72954 4.85855 4.96809 5.05823 5.11970 5.15820 5.19893 5.34496 5.39750 5.46721 5.57878 5.72565 5.74833 6.32939 6.35197 6.78693 7.35303 8.90080 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053535 B = 0.008493 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.894110 B = 3296.115859 C = 3633.429658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.093 3.907 4 H 0.064 0.936 5 C -0.130 4.130 6 C -0.110 4.110 7 C -0.106 4.106 8 C -0.065 4.065 9 H 0.053 0.947 10 C -0.008 4.008 11 C -0.518 4.518 12 H 0.038 0.962 13 C 0.003 3.997 14 N -0.952 5.952 15 Si 0.945 3.055 16 H -0.268 1.268 17 H -0.250 1.250 18 H -0.285 1.285 19 C -0.107 4.107 20 H 0.051 0.949 21 H 0.098 0.902 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.062 0.938 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.818 -10.206 -5.851 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.036 3.964 4 H 0.082 0.918 5 C -0.167 4.167 6 C -0.148 4.148 7 C -0.144 4.144 8 C -0.083 4.083 9 H 0.072 0.928 10 C -0.045 4.045 11 C -0.556 4.556 12 H 0.056 0.944 13 C -0.193 4.193 14 N -0.594 5.594 15 Si 0.769 3.231 16 H -0.194 1.194 17 H -0.173 1.173 18 H -0.210 1.210 19 C -0.144 4.144 20 H 0.069 0.931 21 H 0.116 0.884 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.578 -10.282 -5.789 17.247 hybrid contribution 0.692 0.238 0.507 0.890 sum -11.886 -10.044 -5.281 16.433 Atomic orbital electron populations 1.22965 0.79858 1.03708 1.00679 1.87866 1.21235 1.28463 1.95246 1.22130 0.94262 0.84021 0.96027 0.91779 1.21950 1.01568 0.96787 0.96438 1.21481 0.95880 0.96620 1.00798 1.21479 0.97314 1.00707 0.94889 1.20876 0.96186 0.95065 0.96209 0.92809 1.19587 0.94345 0.94950 0.95657 1.21455 1.04309 0.93637 1.36200 0.94373 1.25964 0.98756 0.98317 0.96313 1.70064 1.20474 1.22658 1.46171 0.85736 0.78952 0.80066 0.78381 1.19354 1.17334 1.21039 1.21632 0.95522 0.97029 1.00262 0.93058 0.88381 0.93635 0.91667 0.90371 0.90600 0.91937 0.93686 0.92761 0.96680 0.96675 0.92669 0.91910 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.82 113.37 1.23 1.67 16 2 O -0.41 -11.06 10.35 -148.98 -1.54 -12.60 16 3 C 0.09 2.58 2.61 30.60 0.08 2.66 16 4 H 0.06 1.68 7.79 -2.39 -0.02 1.67 16 5 C -0.13 -3.26 5.54 30.60 0.17 -3.09 16 6 C -0.11 -3.07 5.92 30.59 0.18 -2.88 16 7 C -0.11 -3.89 5.01 30.59 0.15 -3.74 16 8 C -0.06 -2.54 2.14 -10.78 -0.02 -2.56 16 9 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 10 C -0.01 -0.38 3.51 29.85 0.10 -0.28 16 11 C -0.52 -29.99 8.96 25.60 0.23 -29.76 16 12 H 0.04 2.41 7.30 -2.91 -0.02 2.39 16 13 C 0.00 0.16 5.47 84.65 0.46 0.62 16 14 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 15 Si 0.94 45.28 27.47 68.60 1.88 47.17 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 19 C -0.11 -3.54 4.86 30.61 0.15 -3.39 16 20 H 0.05 0.82 7.87 -2.39 -0.02 0.80 16 21 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 23 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.08 1.62 7.87 -2.39 -0.02 1.60 16 25 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.91 6.95 -2.38 -0.02 1.89 16 28 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.01 0.70 7.57 -2.39 -0.02 0.69 16 30 H 0.01 0.71 7.20 -2.39 -0.02 0.70 16 31 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -65.38 261.45 4.37 -61.01 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 0.99 Total: 5.28 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 2.73 Total: -40.75 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.30 Total: -60.11 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.54 Total: -12.60 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -65.38 4.37 -61.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.793 kcal (2) G-P(sol) polarization free energy of solvation -65.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds