Wall clock time and date at job start Mon Mar 30 2020 02:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00197 * 2 1 4 4 H 1.09001 * 109.47015 * 330.00130 * 3 2 1 5 5 C 1.53005 * 109.47305 * 90.00149 * 3 2 1 6 6 C 1.52997 * 109.46871 * 59.99996 * 5 3 2 7 7 C 1.52992 * 109.47448 * 60.00378 * 6 5 3 8 8 C 1.53000 * 109.46962 * 299.99984 * 7 6 5 9 9 H 1.09000 * 109.47102 * 299.99554 * 8 7 6 10 10 C 1.53005 * 109.47167 * 180.02562 * 8 7 6 11 11 C 1.50695 * 109.47088 * 64.99641 * 10 8 7 12 12 H 1.07995 * 120.00496 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99572 * 180.02562 * 11 10 8 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 C 1.53000 * 109.47494 * 210.00176 * 3 2 1 20 20 H 1.09004 * 109.46967 * 59.99470 * 1 2 3 21 21 H 1.08992 * 109.46944 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46977 * 300.00092 * 1 2 3 23 23 H 1.09004 * 109.46908 * 300.00156 * 5 3 2 24 24 H 1.09000 * 109.47443 * 180.02562 * 5 3 2 25 25 H 1.09001 * 109.47166 * 299.99611 * 6 5 3 26 26 H 1.09004 * 109.46717 * 180.02562 * 6 5 3 27 27 H 1.08996 * 109.47729 * 180.02562 * 7 6 5 28 28 H 1.09001 * 109.47102 * 59.99208 * 7 6 5 29 29 H 1.09002 * 109.46935 * 304.99606 * 10 8 7 30 30 H 1.08998 * 109.47061 * 185.00400 * 10 8 7 31 31 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 32 32 H 1.09000 * 109.47630 * 180.02562 * 19 3 2 33 33 H 1.08998 * 109.47042 * 59.99214 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2178 1.7714 1.4425 6 6 3.1516 0.7973 2.1637 7 6 4.5002 0.7551 1.4425 8 6 4.2927 0.2892 0.0000 9 1 3.8494 -0.7066 0.0000 10 6 5.6415 0.2463 -0.7211 11 6 6.5177 -0.8021 -0.0856 12 1 6.1494 -1.3804 0.7488 13 6 7.7898 -1.0231 -0.5695 14 7 8.2385 -0.3186 -1.5853 15 14 8.8758 -2.3232 0.2177 16 1 8.2162 -3.6495 0.1118 17 1 9.0894 -1.9895 1.6488 18 1 10.1849 -2.3647 -0.4821 19 6 3.3589 1.2633 -0.7213 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.2569 1.8014 1.9564 24 1 2.6607 2.7673 1.4426 25 1 2.7081 -0.1984 2.1638 26 1 3.2990 1.1290 3.1915 27 1 5.1653 0.0608 1.9560 28 1 4.9435 1.7509 1.4424 29 1 6.1257 1.2199 -0.6442 30 1 5.4843 0.0008 -1.7714 31 1 7.6745 0.3563 -1.9944 32 1 3.8025 2.2589 -0.7209 33 1 3.2112 0.9313 -1.7489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039089611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:00 Heat of formation + Delta-G solvation = -103.726506 kcal Electronic energy + Delta-G solvation = -13185.142912 eV Core-core repulsion = 11015.576935 eV Total energy + Delta-G solvation = -2169.565977 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38613 -37.49785 -35.33737 -32.67446 -31.19236 -28.16051 -27.31528 -25.08179 -23.37373 -22.06411 -20.47514 -18.85392 -17.13443 -16.64851 -16.23806 -15.77484 -15.62753 -15.15094 -14.64651 -14.28154 -13.78453 -13.45991 -13.20019 -12.94643 -12.73055 -12.49568 -12.38240 -12.13645 -11.94249 -11.79399 -11.29971 -11.18570 -11.04449 -10.52475 -10.40214 -10.29887 -8.66210 -6.34522 1.50737 1.59883 1.79133 2.57405 2.95088 3.17877 3.83047 3.85873 3.95349 4.30194 4.35704 4.40813 4.51584 4.58787 4.65686 4.67097 4.73219 4.84163 4.96001 4.99481 5.04273 5.10628 5.17168 5.35196 5.40185 5.45951 5.59457 5.74409 6.07592 6.22225 6.41150 6.62477 7.46319 8.74406 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053362 B = 0.008396 C = 0.008224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.588241 B = 3334.012113 C = 3403.732131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.093 3.907 4 H 0.079 0.921 5 C -0.133 4.133 6 C -0.107 4.107 7 C -0.099 4.099 8 C -0.060 4.060 9 H 0.043 0.957 10 C 0.015 3.985 11 C -0.606 4.606 12 H 0.048 0.952 13 C -0.043 4.043 14 N -0.941 5.941 15 Si 1.116 2.884 16 H -0.271 1.271 17 H -0.268 1.268 18 H -0.282 1.282 19 C -0.111 4.111 20 H 0.049 0.951 21 H 0.089 0.911 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.049 0.951 29 H -0.012 1.012 30 H -0.022 1.022 31 H 0.253 0.747 32 H 0.075 0.925 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.790 3.769 6.143 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.036 3.964 4 H 0.097 0.903 5 C -0.170 4.170 6 C -0.144 4.144 7 C -0.137 4.137 8 C -0.079 4.079 9 H 0.062 0.938 10 C -0.022 4.022 11 C -0.644 4.644 12 H 0.067 0.933 13 C -0.240 4.240 14 N -0.579 5.579 15 Si 0.937 3.063 16 H -0.196 1.196 17 H -0.193 1.193 18 H -0.208 1.208 19 C -0.149 4.149 20 H 0.067 0.933 21 H 0.107 0.893 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.006 0.994 30 H -0.003 1.003 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.214 2.904 6.067 14.827 hybrid contribution -1.394 0.926 -0.392 1.719 sum -14.608 3.830 5.674 16.133 Atomic orbital electron populations 1.22946 0.80127 1.03373 1.00749 1.87979 1.20928 1.28588 1.95159 1.22148 0.93698 0.84510 0.96048 0.90276 1.21993 1.00309 0.99365 0.95371 1.21394 0.94484 0.99853 0.98713 1.21398 0.97220 0.99927 0.95121 1.20785 0.94006 0.97789 0.95296 0.93850 1.19236 0.94067 0.94917 0.94019 1.22456 1.01676 1.21850 1.18382 0.93346 1.27435 0.98978 1.01837 0.95733 1.70915 1.39962 1.23548 1.23516 0.82964 0.74343 0.73448 0.75573 1.19640 1.19294 1.20757 1.21722 0.94777 0.99821 0.98575 0.93271 0.89274 0.92838 0.90063 0.90214 0.92766 0.90998 0.93905 0.93257 0.99388 1.00337 0.93727 0.90644 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.82 113.37 1.23 1.73 16 2 O -0.41 -12.48 9.00 -148.98 -1.34 -13.82 16 3 C 0.09 2.63 2.92 30.60 0.09 2.72 16 4 H 0.08 1.79 7.79 -2.39 -0.02 1.78 16 5 C -0.13 -3.33 5.63 30.59 0.17 -3.15 16 6 C -0.11 -3.26 5.78 30.59 0.18 -3.08 16 7 C -0.10 -3.92 5.01 30.59 0.15 -3.77 16 8 C -0.06 -2.67 1.99 -10.79 -0.02 -2.69 16 9 H 0.04 2.09 7.68 -2.39 -0.02 2.07 16 10 C 0.01 0.80 3.76 29.85 0.11 0.92 16 11 C -0.61 -36.30 8.41 25.60 0.22 -36.09 16 12 H 0.05 2.85 7.06 -2.91 -0.02 2.83 16 13 C -0.04 -2.63 5.46 84.66 0.46 -2.16 16 14 N -0.94 -60.83 13.65 21.45 0.29 -60.54 16 15 Si 1.12 52.41 29.90 68.60 2.05 54.46 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 C -0.11 -3.99 4.95 30.60 0.15 -3.84 16 20 H 0.05 0.88 8.09 -2.38 -0.02 0.86 16 21 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.05 0.91 7.87 -2.38 -0.02 0.89 16 23 H 0.08 1.64 7.87 -2.38 -0.02 1.62 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 1.76 7.68 -2.39 -0.02 1.75 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.88 6.95 -2.39 -0.02 1.87 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H -0.01 -0.70 8.01 -2.39 -0.02 -0.72 16 30 H -0.02 -1.29 8.01 -2.39 -0.02 -1.31 16 31 H 0.25 16.61 7.22 -92.70 -0.67 15.94 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -69.57 261.66 4.89 -64.68 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.15 Total: 4.64 kcal Atomic # 6 Polarization: -52.17 SS G_CDS: 2.74 Total: -49.43 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.29 Total: -60.54 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.34 Total: -13.82 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 2.05 Total: 54.46 kcal Total: -69.57 4.89 -64.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.046 kcal (2) G-P(sol) polarization free energy of solvation -69.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds