Wall clock time and date at job start Mon Mar 30 2020 02:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00087 * 2 1 4 4 H 1.08997 * 109.46945 * 30.00377 * 3 2 1 5 5 C 1.53007 * 109.47151 * 270.00186 * 3 2 1 6 6 C 1.52998 * 109.47185 * 300.00174 * 5 3 2 7 7 C 1.53001 * 109.47168 * 300.00321 * 6 5 3 8 8 C 1.52998 * 109.47440 * 59.99596 * 7 6 5 9 9 H 1.09000 * 109.46819 * 60.00333 * 8 7 6 10 10 C 1.53001 * 109.47103 * 180.02562 * 8 7 6 11 11 C 1.50694 * 109.47168 * 295.00282 * 10 8 7 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.52998 * 109.47270 * 300.00342 * 8 7 6 20 20 H 1.09002 * 109.47085 * 59.99375 * 1 2 3 21 21 H 1.08999 * 109.47801 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46737 * 300.00214 * 1 2 3 23 23 H 1.09000 * 109.47014 * 180.02562 * 5 3 2 24 24 H 1.08995 * 109.47091 * 60.00141 * 5 3 2 25 25 H 1.08990 * 109.47168 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.47193 * 60.00050 * 6 5 3 27 27 H 1.09007 * 109.46696 * 299.99629 * 7 6 5 28 28 H 1.08997 * 109.47274 * 180.02562 * 7 6 5 29 29 H 1.09007 * 109.46922 * 174.99984 * 10 8 7 30 30 H 1.09003 * 109.46836 * 55.00740 * 10 8 7 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.47050 * 179.97438 * 19 8 7 33 33 H 1.09000 * 109.47193 * 299.99762 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7714 -1.4426 6 6 3.1514 0.7974 -2.1639 7 6 4.5000 0.7550 -1.4426 8 6 4.2927 0.2891 -0.0001 9 1 3.8493 -0.7066 -0.0002 10 6 5.6413 0.2474 0.7212 11 6 6.5185 -0.8004 0.0860 12 1 6.1512 -1.3785 -0.7490 13 6 7.7903 -1.0210 0.5709 14 7 8.2379 -0.3167 1.5873 15 14 8.8774 -2.3204 -0.2161 16 1 10.1865 -2.3608 0.4840 17 1 8.2183 -3.6469 -0.1113 18 1 9.0920 -1.9859 -1.6469 19 6 3.3589 1.2632 0.7212 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3635 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 2.6614 2.7670 -1.4425 24 1 1.2568 1.8015 -1.9563 25 1 3.2995 1.1295 -3.1913 26 1 2.7080 -0.1984 -2.1639 27 1 4.9435 1.7508 -1.4427 28 1 5.1654 0.0615 -1.9568 29 1 5.4841 0.0018 1.7715 30 1 6.1247 1.2214 0.6443 31 1 9.1325 -0.4723 1.9286 32 1 3.2109 0.9310 1.7487 33 1 3.8023 2.2589 0.7212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039089612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:02 Heat of formation + Delta-G solvation = -80.332223 kcal Electronic energy + Delta-G solvation = -13152.604841 eV Core-core repulsion = 10984.053316 eV Total energy + Delta-G solvation = -2168.551524 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.98861 -35.94199 -33.01661 -30.99476 -29.75648 -26.61650 -26.27673 -23.08593 -21.91252 -20.20725 -18.87563 -16.23818 -15.79499 -15.37617 -15.02340 -14.35731 -14.08974 -13.36255 -12.92355 -12.42211 -12.17791 -11.77112 -11.71255 -11.40605 -11.17396 -10.88384 -10.67539 -10.57496 -10.30589 -10.12162 -9.80365 -9.41446 -9.26842 -8.81061 -8.73491 -8.24582 -5.90252 -3.90770 3.39212 3.43066 3.46112 4.07885 4.53947 5.12006 5.17669 5.32609 5.42896 5.45311 5.45501 5.70890 5.74789 5.90897 5.94499 6.03934 6.16699 6.25885 6.31033 6.47776 6.63035 6.81927 6.88983 7.19227 7.27413 7.34147 7.53790 7.80202 7.97562 8.11798 8.56134 9.15827 9.72040 11.21310 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053643 B = 0.008349 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.845336 B = 3352.952001 C = 3422.408400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.090 3.910 4 H 0.049 0.951 5 C -0.137 4.137 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.075 4.075 9 H 0.064 0.936 10 C 0.026 3.974 11 C -0.511 4.511 12 H 0.055 0.945 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.889 3.111 16 H -0.288 1.288 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.111 4.111 20 H 0.034 0.966 21 H 0.080 0.920 22 H 0.035 0.965 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.259 0.741 32 H 0.061 0.939 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.882 3.633 -4.319 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.032 3.968 4 H 0.067 0.933 5 C -0.175 4.175 6 C -0.152 4.152 7 C -0.141 4.141 8 C -0.093 4.093 9 H 0.082 0.918 10 C -0.011 4.011 11 C -0.549 4.549 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.717 3.283 16 H -0.214 1.214 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.149 4.149 20 H 0.053 0.947 21 H 0.099 0.901 22 H 0.054 0.946 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.609 3.493 -4.205 13.743 hybrid contribution 0.433 -0.423 -0.373 0.711 sum -12.176 3.069 -4.578 13.366 Atomic orbital electron populations 1.22718 0.82552 1.02146 0.99210 1.88021 1.18206 1.28077 1.94919 1.22207 0.95339 0.83865 0.95346 0.93298 1.21990 0.99378 0.99692 0.96402 1.21483 0.96711 0.99330 0.97698 1.21494 0.94987 1.01020 0.96568 1.21095 0.96932 0.97424 0.93897 0.91764 1.19148 0.89924 0.96815 0.95218 1.21251 0.98548 1.19390 1.15750 0.92662 1.25023 0.98105 0.96297 0.95161 1.69961 1.17820 1.40830 1.25246 0.86712 0.79783 0.82391 0.79432 1.21418 1.20320 1.20344 1.21760 0.93123 1.00862 0.99138 0.94702 0.90138 0.94617 0.91497 0.93024 0.93309 0.91828 0.93207 0.91302 0.96802 0.96821 0.93135 0.92013 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.46 16 2 O -0.37 -6.08 9.00 -35.23 -0.32 -6.40 16 3 C 0.09 1.38 2.92 -26.73 -0.08 1.31 16 4 H 0.05 0.65 7.79 -51.93 -0.40 0.25 16 5 C -0.14 -1.96 5.63 -26.73 -0.15 -2.11 16 6 C -0.11 -1.86 5.78 -26.73 -0.15 -2.02 16 7 C -0.10 -2.03 5.01 -26.73 -0.13 -2.16 16 8 C -0.08 -1.62 1.99 -90.62 -0.18 -1.80 16 9 H 0.06 1.48 7.68 -51.93 -0.40 1.08 16 10 C 0.03 0.69 4.45 -27.89 -0.12 0.56 16 11 C -0.51 -14.72 8.41 -34.44 -0.29 -15.01 16 12 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 15 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.11 -2.02 4.94 -26.73 -0.13 -2.15 16 20 H 0.03 0.37 7.87 -51.93 -0.41 -0.04 16 21 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.65 7.87 -51.93 -0.41 0.24 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 27 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.07 1.47 6.95 -51.93 -0.36 1.10 16 29 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 262.98 15.07 3.96 3.96 Total: -1.00 -30.74 262.98 -6.57 -37.32 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -5.69 Total: -4.76 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -0.25 Total: -20.42 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 0.74 Total: -26.86 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.32 Total: -6.40 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.74 -6.57 -37.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.015 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds