Wall clock time and date at job start Mon Mar 30 2020 02:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00087 * 2 1 4 4 H 1.08997 * 109.46945 * 30.00377 * 3 2 1 5 5 C 1.53007 * 109.47151 * 270.00186 * 3 2 1 6 6 C 1.52998 * 109.47185 * 300.00174 * 5 3 2 7 7 C 1.53001 * 109.47168 * 300.00321 * 6 5 3 8 8 C 1.52998 * 109.47440 * 59.99596 * 7 6 5 9 9 H 1.09000 * 109.46819 * 60.00333 * 8 7 6 10 10 C 1.53001 * 109.47103 * 180.02562 * 8 7 6 11 11 C 1.50694 * 109.47168 * 295.00282 * 10 8 7 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.52998 * 109.47270 * 300.00342 * 8 7 6 20 20 H 1.09002 * 109.47085 * 59.99375 * 1 2 3 21 21 H 1.08999 * 109.47801 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46737 * 300.00214 * 1 2 3 23 23 H 1.09000 * 109.47014 * 180.02562 * 5 3 2 24 24 H 1.08995 * 109.47091 * 60.00141 * 5 3 2 25 25 H 1.08990 * 109.47168 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.47193 * 60.00050 * 6 5 3 27 27 H 1.09007 * 109.46696 * 299.99629 * 7 6 5 28 28 H 1.08997 * 109.47274 * 180.02562 * 7 6 5 29 29 H 1.09007 * 109.46922 * 174.99984 * 10 8 7 30 30 H 1.09003 * 109.46836 * 55.00740 * 10 8 7 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.47050 * 179.97438 * 19 8 7 33 33 H 1.09000 * 109.47193 * 299.99762 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7714 -1.4426 6 6 3.1514 0.7974 -2.1639 7 6 4.5000 0.7550 -1.4426 8 6 4.2927 0.2891 -0.0001 9 1 3.8493 -0.7066 -0.0002 10 6 5.6413 0.2474 0.7212 11 6 6.5185 -0.8004 0.0860 12 1 6.1512 -1.3785 -0.7490 13 6 7.7903 -1.0210 0.5709 14 7 8.2379 -0.3167 1.5873 15 14 8.8774 -2.3204 -0.2161 16 1 10.1865 -2.3608 0.4840 17 1 8.2183 -3.6469 -0.1113 18 1 9.0920 -1.9859 -1.6469 19 6 3.3589 1.2632 0.7212 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3635 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 2.6614 2.7670 -1.4425 24 1 1.2568 1.8015 -1.9563 25 1 3.2995 1.1295 -3.1913 26 1 2.7080 -0.1984 -2.1639 27 1 4.9435 1.7508 -1.4427 28 1 5.1654 0.0615 -1.9568 29 1 5.4841 0.0018 1.7715 30 1 6.1247 1.2214 0.6443 31 1 9.1325 -0.4723 1.9286 32 1 3.2109 0.9310 1.7487 33 1 3.8023 2.2589 0.7212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039089612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:02 Heat of formation + Delta-G solvation = -98.977463 kcal Electronic energy + Delta-G solvation = -13153.413359 eV Core-core repulsion = 10984.053316 eV Total energy + Delta-G solvation = -2169.360043 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.29706 -37.36125 -35.03880 -32.74413 -31.13563 -28.52139 -27.27567 -25.03825 -23.30576 -21.78656 -20.36843 -18.44707 -17.04279 -16.69280 -16.37207 -16.10860 -15.54447 -14.82324 -14.42908 -14.18976 -13.54479 -13.37506 -13.33543 -12.96025 -12.70157 -12.51695 -12.45825 -12.06571 -11.99052 -11.72794 -11.47089 -11.10897 -10.97767 -10.54136 -10.50358 -10.22204 -8.16747 -6.26007 1.38704 1.42099 1.49838 2.42318 3.01190 3.15746 3.91559 3.94195 4.04583 4.40006 4.45000 4.47761 4.57721 4.65424 4.74417 4.76454 4.83024 4.88698 5.03819 5.08459 5.20913 5.24822 5.34806 5.48063 5.51164 5.56134 5.66537 5.86570 5.95443 6.32084 6.47429 6.89629 7.41814 8.95143 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053643 B = 0.008349 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.845336 B = 3352.952001 C = 3422.408400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.093 3.907 4 H 0.078 0.922 5 C -0.133 4.133 6 C -0.107 4.107 7 C -0.100 4.100 8 C -0.066 4.066 9 H 0.044 0.956 10 C 0.031 3.969 11 C -0.531 4.531 12 H 0.057 0.943 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.961 3.039 16 H -0.282 1.282 17 H -0.269 1.269 18 H -0.266 1.266 19 C -0.111 4.111 20 H 0.052 0.948 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.044 0.956 29 H -0.018 1.018 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.050 0.950 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.186 3.813 -5.714 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.036 3.964 4 H 0.095 0.905 5 C -0.170 4.170 6 C -0.145 4.145 7 C -0.137 4.137 8 C -0.085 4.085 9 H 0.062 0.938 10 C -0.006 4.006 11 C -0.569 4.569 12 H 0.075 0.925 13 C -0.200 4.200 14 N -0.577 5.577 15 Si 0.785 3.215 16 H -0.207 1.207 17 H -0.194 1.194 18 H -0.191 1.191 19 C -0.148 4.148 20 H 0.071 0.929 21 H 0.107 0.893 22 H 0.067 0.933 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.000 1.000 30 H 0.010 0.990 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.935 3.673 -5.608 15.464 hybrid contribution 0.825 -0.484 0.112 0.963 sum -13.110 3.189 -5.496 14.569 Atomic orbital electron populations 1.22935 0.80260 1.03313 1.00675 1.87980 1.20798 1.28625 1.95152 1.22159 0.93826 0.84424 0.96025 0.90456 1.21989 1.00227 0.99412 0.95412 1.21399 0.94667 0.99784 0.98639 1.21411 0.97038 1.00063 0.95231 1.20890 0.94613 0.97709 0.95241 0.93752 1.19057 0.92589 0.94997 0.93941 1.21633 0.99340 1.19954 1.15944 0.92497 1.25966 0.99722 0.98644 0.95648 1.70098 1.18396 1.42525 1.26649 0.85567 0.77676 0.79407 0.78818 1.20729 1.19439 1.19127 1.21706 0.94615 0.99926 0.98579 0.92931 0.89305 0.93334 0.90258 0.90252 0.91151 0.92766 0.93198 0.93760 0.99961 0.99037 0.92906 0.93141 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.82 113.37 1.23 1.73 16 2 O -0.41 -12.47 9.00 -148.98 -1.34 -13.81 16 3 C 0.09 2.64 2.92 30.60 0.09 2.73 16 4 H 0.08 1.78 7.79 -2.39 -0.02 1.76 16 5 C -0.13 -3.35 5.63 30.60 0.17 -3.17 16 6 C -0.11 -3.26 5.78 30.59 0.18 -3.08 16 7 C -0.10 -3.91 5.01 30.59 0.15 -3.76 16 8 C -0.07 -2.91 1.99 -10.79 -0.02 -2.93 16 9 H 0.04 2.11 7.68 -2.39 -0.02 2.09 16 10 C 0.03 1.73 4.45 29.85 0.13 1.86 16 11 C -0.53 -31.45 8.41 25.60 0.22 -31.23 16 12 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 13 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 14 N -0.94 -58.84 13.29 21.45 0.28 -58.56 16 15 Si 0.96 45.86 29.54 68.60 2.03 47.89 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 C -0.11 -3.99 4.94 30.59 0.15 -3.84 16 20 H 0.05 0.91 7.87 -2.39 -0.02 0.89 16 21 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 22 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 23 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.08 1.62 7.87 -2.39 -0.02 1.60 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.05 1.75 7.68 -2.39 -0.02 1.73 16 27 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.04 1.91 6.95 -2.39 -0.02 1.89 16 29 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -67.47 262.98 4.77 -62.70 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.05 Total: 3.18 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 2.76 Total: -41.40 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.28 Total: -58.56 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -1.34 Total: -13.81 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -67.47 4.77 -62.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.279 kcal (2) G-P(sol) polarization free energy of solvation -67.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds