Wall clock time and date at job start Mon Mar 30 2020 02:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99577 * 2 1 4 4 H 1.09000 * 109.47490 * 330.00387 * 3 2 1 5 5 C 1.53006 * 109.46748 * 90.00295 * 3 2 1 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47592 * 300.00035 * 6 5 3 8 8 C 1.52996 * 109.47165 * 60.00300 * 7 6 5 9 9 H 1.08996 * 109.47134 * 59.99508 * 8 7 6 10 10 C 1.52995 * 109.47577 * 180.02562 * 8 7 6 11 11 C 1.50705 * 109.46702 * 295.00088 * 10 8 7 12 12 H 1.08003 * 120.00165 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99815 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00431 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99799 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46769 * 90.00434 * 15 13 11 17 17 H 1.48502 * 109.46958 * 209.99970 * 15 13 11 18 18 H 1.48496 * 109.47292 * 330.00218 * 15 13 11 19 19 C 1.52997 * 109.47139 * 210.00129 * 3 2 1 20 20 H 1.09000 * 109.47333 * 59.99541 * 1 2 3 21 21 H 1.09000 * 109.46788 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46805 * 299.99656 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99993 * 5 3 2 24 24 H 1.09000 * 109.47050 * 59.99822 * 5 3 2 25 25 H 1.09000 * 109.47160 * 60.00369 * 6 5 3 26 26 H 1.09002 * 109.46719 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.47140 * 300.00346 * 7 6 5 28 28 H 1.09001 * 109.47375 * 180.02562 * 7 6 5 29 29 H 1.08998 * 109.47220 * 54.99171 * 10 8 7 30 30 H 1.08991 * 109.47712 * 174.99863 * 10 8 7 31 31 H 0.96993 * 120.00093 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47140 * 300.00473 * 19 3 2 33 33 H 1.09001 * 109.47230 * 59.99617 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9995 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 2.8404 3.1689 1.4426 7 6 4.1891 3.1263 0.7214 8 6 3.9817 2.6605 -0.7210 9 1 3.3166 3.3545 -1.2349 10 6 5.3304 2.6173 -1.4421 11 6 5.8871 4.0135 -1.5501 12 1 5.3341 4.8483 -1.1454 13 6 7.1026 4.2253 -2.1656 14 7 7.7763 3.2088 -2.6580 15 14 7.7923 5.9561 -2.3002 16 1 8.6260 6.2508 -1.1071 17 1 8.6254 6.0631 -3.5249 18 1 6.6740 6.9302 -2.3756 19 6 3.3588 1.2635 -0.7213 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.2569 1.8013 1.9564 24 1 2.8829 1.0775 1.9564 25 1 2.1754 3.8630 0.9287 26 1 2.9886 3.5006 2.4703 27 1 4.8541 2.4322 1.2353 28 1 4.6330 4.1218 0.7218 29 1 6.0236 1.9924 -0.8789 30 1 5.1955 2.2016 -2.4405 31 1 8.6312 3.3579 -3.0914 32 1 4.0241 0.5695 -0.2075 33 1 3.2111 0.9315 -1.7489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039089613.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:03 Heat of formation + Delta-G solvation = -101.491161 kcal Electronic energy + Delta-G solvation = -12981.889933 eV Core-core repulsion = 10812.420888 eV Total energy + Delta-G solvation = -2169.469045 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.22887 -37.71893 -35.10338 -32.80441 -31.05896 -28.53176 -27.27099 -25.04384 -23.24513 -21.82326 -20.62318 -18.43811 -17.36248 -16.64013 -16.31035 -15.99695 -15.49559 -15.06277 -14.47259 -14.17730 -13.97403 -13.44675 -13.34652 -12.90361 -12.60854 -12.46158 -12.45547 -12.05187 -11.86484 -11.70459 -11.53903 -11.24149 -11.00434 -10.85285 -10.53111 -10.25793 -8.16806 -6.26749 1.40694 1.42071 1.52943 2.42297 2.85994 3.16388 3.82253 3.89275 4.16203 4.28364 4.34059 4.47933 4.55889 4.58627 4.65064 4.69323 4.74057 4.86137 5.00394 5.11984 5.14483 5.20883 5.30341 5.42518 5.45464 5.53283 5.60104 5.82413 5.89604 6.29070 6.35343 6.89589 7.41783 8.95516 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062905 B = 0.007733 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.005416 B = 3619.915714 C = 3883.864703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.095 3.905 4 H 0.068 0.932 5 C -0.131 4.131 6 C -0.109 4.109 7 C -0.104 4.104 8 C -0.068 4.068 9 H 0.058 0.942 10 C 0.031 3.969 11 C -0.529 4.529 12 H 0.064 0.936 13 C -0.004 4.004 14 N -0.938 5.938 15 Si 0.963 3.037 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.261 1.261 19 C -0.106 4.106 20 H 0.046 0.954 21 H 0.097 0.903 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.056 0.944 29 H -0.013 1.013 30 H -0.015 1.015 31 H 0.262 0.738 32 H 0.051 0.949 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.566 -1.365 7.426 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.038 3.962 4 H 0.086 0.914 5 C -0.168 4.168 6 C -0.146 4.146 7 C -0.142 4.142 8 C -0.087 4.087 9 H 0.076 0.924 10 C -0.006 4.006 11 C -0.567 4.567 12 H 0.083 0.917 13 C -0.201 4.201 14 N -0.578 5.578 15 Si 0.788 3.212 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.185 1.185 19 C -0.144 4.144 20 H 0.064 0.936 21 H 0.115 0.885 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.006 0.994 30 H 0.003 0.997 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.315 -1.574 7.340 15.285 hybrid contribution 0.747 0.675 -0.495 1.122 sum -12.568 -0.900 6.845 14.339 Atomic orbital electron populations 1.22974 0.79761 1.03707 1.00763 1.87880 1.21373 1.28651 1.95264 1.22135 0.93926 0.84005 0.96162 0.91440 1.21958 1.01614 0.97109 0.96164 1.21492 0.95787 0.96392 1.00961 1.21468 0.97286 1.00912 0.94495 1.20979 0.96472 0.94657 0.96550 0.92389 1.19034 0.92338 0.95645 0.93618 1.21658 1.04349 0.94300 1.36362 0.91747 1.26000 0.97619 1.01250 0.95280 1.70115 1.15048 1.32718 1.39962 0.85473 0.78499 0.79639 0.77597 1.19832 1.21040 1.18550 1.21602 0.95613 0.97549 0.99655 0.93583 0.88472 0.92844 0.90081 0.92161 0.91332 0.90288 0.93709 0.92560 0.99421 0.99683 0.92952 0.93026 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.82 113.37 1.23 1.70 16 2 O -0.41 -12.10 10.35 -148.98 -1.54 -13.64 16 3 C 0.10 2.82 2.61 30.60 0.08 2.90 16 4 H 0.07 1.85 7.79 -2.39 -0.02 1.83 16 5 C -0.13 -3.42 5.54 30.60 0.17 -3.25 16 6 C -0.11 -2.98 5.92 30.59 0.18 -2.80 16 7 C -0.10 -3.84 5.01 30.59 0.15 -3.69 16 8 C -0.07 -2.84 2.14 -10.81 -0.02 -2.86 16 9 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 10 C 0.03 1.66 4.45 29.85 0.13 1.79 16 11 C -0.53 -30.15 8.41 25.60 0.22 -29.93 16 12 H 0.06 3.48 7.06 -2.91 -0.02 3.46 16 13 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 14 N -0.94 -58.33 13.29 21.45 0.28 -58.05 16 15 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 C -0.11 -3.97 4.85 30.58 0.15 -3.82 16 20 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 21 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 0.89 7.87 -2.39 -0.02 0.87 16 23 H 0.08 1.71 7.87 -2.39 -0.02 1.69 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 2.23 6.95 -2.39 -0.02 2.21 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.76 16 30 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -65.32 265.05 4.56 -60.76 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 1.04 Total: 3.99 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 2.75 Total: -39.75 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.28 Total: -58.05 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.54 Total: -13.64 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.32 4.56 -60.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089613.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.730 kcal (2) G-P(sol) polarization free energy of solvation -65.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds