Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00299 * 2 1 4 4 H 1.09000 * 109.46851 * 30.00180 * 3 2 1 5 5 C 1.53002 * 109.46951 * 269.99975 * 3 2 1 6 6 C 1.52993 * 109.47372 * 299.99942 * 5 3 2 7 7 C 1.53004 * 109.47164 * 300.00431 * 6 5 3 8 8 C 1.53002 * 109.47358 * 59.99938 * 7 6 5 9 9 C 1.52994 * 109.46859 * 149.99995 * 3 2 1 10 10 H 1.09006 * 109.47184 * 180.02562 * 9 3 2 11 11 C 1.53002 * 109.47323 * 299.99753 * 9 3 2 12 12 C 1.50706 * 109.46931 * 184.99880 * 11 9 3 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99398 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 19 19 H 1.48498 * 109.47295 * 60.00420 * 16 14 12 20 20 H 1.09000 * 109.46583 * 300.00086 * 1 2 3 21 21 H 1.09000 * 109.47137 * 59.99705 * 1 2 3 22 22 H 1.08995 * 109.47685 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47059 * 60.00066 * 5 3 2 24 24 H 1.09002 * 109.46816 * 179.97438 * 5 3 2 25 25 H 1.09002 * 109.47330 * 60.00094 * 6 5 3 26 26 H 1.09001 * 109.47333 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.47210 * 180.02562 * 7 6 5 28 28 H 1.09002 * 109.46722 * 300.00035 * 7 6 5 29 29 H 1.09000 * 109.47089 * 180.02562 * 8 7 6 30 30 H 1.08994 * 109.47265 * 60.00028 * 8 7 6 31 31 H 1.09000 * 109.46986 * 65.00438 * 11 9 3 32 32 H 1.08992 * 109.46974 * 305.00502 * 11 9 3 33 33 H 0.97000 * 119.99706 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2178 1.7713 -1.4425 6 6 3.1515 0.7973 -2.1638 7 6 4.5002 0.7550 -1.4425 8 6 4.2928 0.2890 0.0000 9 6 3.3589 1.2631 0.7212 10 1 3.8022 2.2590 0.7217 11 6 3.1515 0.7973 2.1638 12 6 4.4592 0.8727 2.9090 13 1 5.3492 1.2187 2.4043 14 6 4.5194 0.4999 4.2350 15 7 3.4358 0.0781 4.8494 16 14 6.1402 0.5941 5.1589 17 1 5.9391 0.1406 6.5587 18 1 7.1402 -0.2802 4.4948 19 1 6.6299 1.9960 5.1578 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.2569 1.8014 -1.9563 24 1 2.6608 2.7673 -1.4425 25 1 2.7081 -0.1985 -2.1638 26 1 3.2989 1.1290 -3.1916 27 1 5.1656 0.0614 -1.9566 28 1 4.9435 1.7508 -1.4425 29 1 5.2535 0.2593 0.5139 30 1 3.8494 -0.7067 0.0000 31 1 2.7914 -0.2316 2.1651 32 1 2.4180 1.4395 2.6510 33 1 2.5941 0.0296 4.3697 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039089627.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = -102.545185 kcal Electronic energy + Delta-G solvation = -13377.529046 eV Core-core repulsion = 11208.014296 eV Total energy + Delta-G solvation = -2169.514751 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.47928 -37.07723 -35.60542 -32.82753 -31.04085 -28.30732 -27.16276 -25.12010 -23.30768 -22.09054 -20.47527 -18.81058 -17.23977 -16.74200 -16.38403 -15.65575 -15.34543 -14.82560 -14.69033 -14.47501 -14.03361 -13.64449 -13.05449 -12.86791 -12.79079 -12.51060 -12.26163 -12.11840 -11.93356 -11.72311 -11.37564 -11.19444 -10.94749 -10.62440 -10.50307 -10.15369 -8.65492 -6.34085 1.51063 1.60478 1.79176 2.57989 2.95136 3.18953 3.82295 3.89839 3.96683 4.30222 4.36188 4.40945 4.46359 4.55484 4.61966 4.65328 4.77127 4.77857 4.90367 5.01086 5.12235 5.19593 5.24683 5.38086 5.41726 5.48809 5.54825 5.70542 6.06019 6.22595 6.39492 6.61612 7.47762 8.74667 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043333 B = 0.010343 C = 0.008841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.001634 B = 2706.551014 C = 3166.447534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.092 3.908 4 H 0.046 0.954 5 C -0.132 4.132 6 C -0.106 4.106 7 C -0.113 4.113 8 C -0.094 4.094 9 C -0.068 4.068 10 H 0.066 0.934 11 C 0.025 3.975 12 C -0.606 4.606 13 H 0.053 0.947 14 C -0.045 4.045 15 N -0.942 5.942 16 Si 1.117 2.883 17 H -0.285 1.285 18 H -0.269 1.269 19 H -0.267 1.267 20 H 0.029 0.971 21 H 0.060 0.940 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.039 0.961 31 H -0.015 1.015 32 H -0.026 1.026 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 2.920 -13.634 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.034 3.966 4 H 0.065 0.935 5 C -0.169 4.169 6 C -0.144 4.144 7 C -0.151 4.151 8 C -0.131 4.131 9 C -0.086 4.086 10 H 0.084 0.916 11 C -0.012 4.012 12 C -0.644 4.644 13 H 0.071 0.929 14 C -0.241 4.241 15 N -0.580 5.580 16 Si 0.937 3.063 17 H -0.210 1.210 18 H -0.195 1.195 19 H -0.192 1.192 20 H 0.048 0.952 21 H 0.078 0.922 22 H 0.110 0.890 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.003 0.997 32 H -0.007 1.007 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.119 2.489 -12.188 12.490 hybrid contribution -1.320 0.307 -0.942 1.651 sum -2.440 2.796 -13.131 13.645 Atomic orbital electron populations 1.22888 0.80713 1.03268 1.00121 1.87920 1.20371 1.28437 1.95101 1.22241 0.94057 0.84010 0.96267 0.93542 1.21985 1.00796 0.99826 0.94339 1.21380 0.94646 0.99488 0.98871 1.21551 0.97821 1.01446 0.94267 1.21285 0.98231 0.97963 0.95649 1.21094 0.94338 0.98932 0.94245 0.91601 1.19064 0.95272 0.93718 0.93162 1.22480 0.96304 1.47079 0.98519 0.92877 1.27459 1.06505 0.92961 0.97178 1.70910 1.00792 1.46237 1.40023 0.82957 0.70640 0.77843 0.74815 1.21017 1.19458 1.19192 0.95194 0.92195 0.88963 0.90540 0.90237 0.92658 0.89951 0.91226 0.91647 0.93745 0.94168 0.99707 1.00733 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.82 113.37 1.23 1.98 16 2 O -0.40 -14.99 8.42 -148.98 -1.25 -16.25 16 3 C 0.09 3.29 2.35 30.59 0.07 3.36 16 4 H 0.05 1.67 7.79 -2.39 -0.02 1.65 16 5 C -0.13 -3.55 5.63 30.59 0.17 -3.37 16 6 C -0.11 -2.78 5.78 30.59 0.18 -2.60 16 7 C -0.11 -3.36 5.92 30.60 0.18 -3.18 16 8 C -0.09 -3.77 4.87 30.60 0.15 -3.62 16 9 C -0.07 -2.92 1.97 -10.79 -0.02 -2.94 16 10 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 11 C 0.02 1.37 3.54 29.85 0.11 1.48 16 12 C -0.61 -35.86 8.41 25.60 0.22 -35.64 16 13 H 0.05 3.03 7.06 -2.91 -0.02 3.01 16 14 C -0.04 -2.69 5.46 84.66 0.46 -2.23 16 15 N -0.94 -61.10 13.65 21.45 0.29 -60.81 16 16 Si 1.12 51.97 29.90 68.60 2.05 54.02 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 20 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 21 H 0.06 1.37 7.87 -2.39 -0.02 1.35 16 22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.08 1.74 7.87 -2.39 -0.02 1.72 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.05 1.58 7.68 -2.39 -0.02 1.56 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.04 1.94 6.95 -2.39 -0.02 1.93 16 30 H 0.04 1.75 7.68 -2.39 -0.02 1.73 16 31 H -0.02 -0.94 7.70 -2.39 -0.02 -0.96 16 32 H -0.03 -1.51 8.01 -2.39 -0.02 -1.53 16 33 H 0.25 16.72 7.22 -92.71 -0.67 16.05 16 Total: -1.00 -69.26 260.81 4.98 -64.29 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.15 Total: 5.51 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 2.74 Total: -46.76 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.29 Total: -60.81 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -1.25 Total: -16.25 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 2.05 Total: 54.02 kcal Total: -69.26 4.98 -64.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089627.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.258 kcal (2) G-P(sol) polarization free energy of solvation -69.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds