Wall clock time and date at job start Mon Mar 30 2020 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 114.00182 * 2 1 4 4 H 1.09000 * 109.46838 * 329.99818 * 3 2 1 5 5 C 1.52997 * 109.47266 * 89.99755 * 3 2 1 6 6 C 1.52996 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 3 8 8 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 9 9 C 1.52999 * 109.46735 * 210.00182 * 3 2 1 10 10 H 1.09000 * 109.47160 * 299.99439 * 9 3 2 11 11 C 1.52997 * 109.47592 * 59.99772 * 9 3 2 12 12 C 1.50692 * 109.47279 * 184.99832 * 11 9 3 13 13 H 1.08008 * 120.00068 * 359.97438 * 12 11 9 14 14 C 1.37883 * 120.00230 * 179.97438 * 12 11 9 15 15 N 1.31514 * 120.00065 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 119.99677 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47422 * 89.99919 * 16 14 12 18 18 H 1.48497 * 109.47139 * 210.00014 * 16 14 12 19 19 H 1.48503 * 109.47375 * 329.99872 * 16 14 12 20 20 H 1.08996 * 109.47496 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.46849 * 300.00372 * 1 2 3 22 22 H 1.08997 * 109.47063 * 60.00039 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00248 * 5 3 2 24 24 H 1.09001 * 109.47375 * 300.00231 * 5 3 2 25 25 H 1.08992 * 109.47534 * 180.02562 * 6 5 3 26 26 H 1.08996 * 109.47134 * 59.99508 * 6 5 3 27 27 H 1.09000 * 109.46986 * 299.99742 * 7 6 5 28 28 H 1.09001 * 109.47601 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.46922 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47140 * 59.99976 * 8 7 6 31 31 H 1.09001 * 109.46992 * 305.00257 * 11 9 3 32 32 H 1.08998 * 109.47097 * 64.99445 * 11 9 3 33 33 H 0.97001 * 119.99810 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 2.8395 3.1694 1.4424 7 6 4.1881 3.1277 0.7210 8 6 3.9807 2.6617 -0.7215 9 6 3.3589 1.2631 -0.7213 10 1 4.0242 0.5693 -0.2074 11 6 3.1515 0.7972 -2.1638 12 6 4.4900 0.6376 -2.8375 13 1 5.3979 0.8479 -2.2915 14 6 4.5557 0.2231 -4.1509 15 7 5.7238 0.0833 -4.7387 16 14 2.9855 -0.1400 -5.0952 17 1 2.5157 1.0972 -5.7690 18 1 3.2513 -1.1877 -6.1134 19 1 1.9410 -0.6181 -4.1541 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 2.8830 1.0776 1.9563 24 1 1.2569 1.8015 1.9563 25 1 2.9877 3.5012 2.4700 26 1 2.1740 3.8630 0.9286 27 1 4.8537 2.4340 1.2347 28 1 4.6313 4.1235 0.7213 29 1 4.9415 2.6316 -1.2353 30 1 3.3151 3.3554 -1.2352 31 1 2.6278 -0.1587 -2.1650 32 1 2.5593 1.5366 -2.7028 33 1 5.7700 -0.2080 -5.6628 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039089628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:48 Heat of formation + Delta-G solvation = -77.838083 kcal Electronic energy + Delta-G solvation = -13288.946483 eV Core-core repulsion = 11120.503113 eV Total energy + Delta-G solvation = -2168.443370 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.95468 -36.02171 -33.29085 -31.31876 -29.60393 -27.27087 -25.95750 -22.96957 -21.74086 -20.13800 -19.24752 -16.78025 -16.10167 -15.07395 -14.74763 -14.27360 -13.92946 -13.50970 -13.18915 -12.61542 -12.51913 -12.27497 -11.70090 -11.49608 -11.23914 -10.78954 -10.62327 -10.56820 -10.40022 -10.02356 -9.75726 -9.63328 -9.55803 -8.98175 -8.74674 -8.44451 -5.95957 -3.91864 3.36038 3.43517 3.50126 4.17810 4.53546 5.08511 5.13212 5.31135 5.38534 5.45343 5.54152 5.69120 5.71809 5.79985 5.87381 5.95377 5.98109 6.03609 6.18237 6.38257 6.42024 6.53017 6.61262 6.92163 6.97820 7.09270 7.42145 7.53395 7.74598 7.90383 8.63579 9.09558 9.67817 11.17555 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.011949 C = 0.009453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.495638 B = 2342.661808 C = 2961.307740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.091 3.909 4 H 0.052 0.948 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.123 4.123 8 C -0.104 4.104 9 C -0.068 4.068 10 H 0.069 0.931 11 C -0.008 4.008 12 C -0.511 4.511 13 H 0.073 0.927 14 C 0.065 3.935 15 N -0.907 5.907 16 Si 0.876 3.124 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.264 1.264 20 H 0.079 0.921 21 H 0.033 0.967 22 H 0.037 0.963 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.005 0.995 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.924 4.520 10.589 14.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C 0.034 3.966 4 H 0.070 0.930 5 C -0.176 4.176 6 C -0.151 4.151 7 C -0.161 4.161 8 C -0.142 4.142 9 C -0.086 4.086 10 H 0.088 0.912 11 C -0.045 4.045 12 C -0.549 4.549 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.547 5.547 16 Si 0.704 3.296 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.189 1.189 20 H 0.098 0.902 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.023 0.977 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.731 4.300 10.421 14.258 hybrid contribution -1.021 0.002 -0.625 1.197 sum -9.751 4.302 9.796 14.476 Atomic orbital electron populations 1.22699 0.82523 1.02028 0.99227 1.87967 1.18357 1.28402 1.94861 1.22354 0.96255 0.83650 0.94382 0.92953 1.22030 1.00440 0.97245 0.97927 1.21473 0.97423 0.96369 0.99877 1.21636 0.96443 1.00708 0.97299 1.21518 1.02310 0.95716 0.94609 1.21106 0.92789 0.96758 0.97966 0.91212 1.19578 0.97655 0.96193 0.91078 1.21166 0.92394 1.44565 0.96759 0.90915 1.25011 0.95750 0.95133 0.97681 1.69919 1.23745 1.48307 1.12695 0.86819 0.84771 0.78177 0.79817 1.20535 1.21543 1.18883 0.90246 0.94874 0.94413 0.91341 0.92856 0.92484 0.92362 0.92138 0.92539 0.90058 0.92854 0.95654 0.97651 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.82 101.05 1.09 1.55 16 2 O -0.38 -6.99 9.59 -35.23 -0.34 -7.33 16 3 C 0.09 1.60 2.04 -26.73 -0.05 1.55 16 4 H 0.05 0.89 7.79 -51.93 -0.40 0.49 16 5 C -0.14 -2.01 5.54 -26.73 -0.15 -2.16 16 6 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 7 C -0.12 -1.83 5.92 -26.73 -0.16 -1.98 16 8 C -0.10 -1.92 5.02 -26.70 -0.13 -2.06 16 9 C -0.07 -1.39 1.88 -90.59 -0.17 -1.56 16 10 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 11 C -0.01 -0.19 3.44 -27.89 -0.10 -0.29 16 12 C -0.51 -14.74 8.96 -34.44 -0.31 -15.05 16 13 H 0.07 2.23 7.30 -52.48 -0.38 1.85 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.91 -28.45 13.96 55.43 0.77 -27.67 16 16 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 20 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.03 0.40 7.87 -51.92 -0.41 -0.01 16 22 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.05 0.69 7.87 -51.93 -0.41 0.28 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.68 6.95 -51.93 -0.36 1.32 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.03 0.66 6.59 -51.93 -0.34 0.32 16 32 H 0.01 0.13 7.57 -51.93 -0.39 -0.26 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 260.25 15.07 3.92 3.92 Total: -1.00 -31.12 260.25 -6.21 -37.33 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.67 Total: -4.15 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -0.23 Total: -19.84 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.77 Total: -27.67 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.34 Total: -7.33 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.12 -6.21 -37.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.505 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds