Wall clock time and date at job start Mon Mar 30 2020 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 114.00182 * 2 1 4 4 H 1.09000 * 109.46838 * 329.99818 * 3 2 1 5 5 C 1.52997 * 109.47266 * 89.99755 * 3 2 1 6 6 C 1.52996 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 3 8 8 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 9 9 C 1.52999 * 109.46735 * 210.00182 * 3 2 1 10 10 H 1.09000 * 109.47160 * 299.99439 * 9 3 2 11 11 C 1.52997 * 109.47592 * 59.99772 * 9 3 2 12 12 C 1.50692 * 109.47279 * 184.99832 * 11 9 3 13 13 H 1.08008 * 120.00068 * 359.97438 * 12 11 9 14 14 C 1.37883 * 120.00230 * 179.97438 * 12 11 9 15 15 N 1.31514 * 120.00065 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 119.99677 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47422 * 89.99919 * 16 14 12 18 18 H 1.48497 * 109.47139 * 210.00014 * 16 14 12 19 19 H 1.48503 * 109.47375 * 329.99872 * 16 14 12 20 20 H 1.08996 * 109.47496 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.46849 * 300.00372 * 1 2 3 22 22 H 1.08997 * 109.47063 * 60.00039 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00248 * 5 3 2 24 24 H 1.09001 * 109.47375 * 300.00231 * 5 3 2 25 25 H 1.08992 * 109.47534 * 180.02562 * 6 5 3 26 26 H 1.08996 * 109.47134 * 59.99508 * 6 5 3 27 27 H 1.09000 * 109.46986 * 299.99742 * 7 6 5 28 28 H 1.09001 * 109.47601 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.46922 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47140 * 59.99976 * 8 7 6 31 31 H 1.09001 * 109.46992 * 305.00257 * 11 9 3 32 32 H 1.08998 * 109.47097 * 64.99445 * 11 9 3 33 33 H 0.97001 * 119.99810 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 2.8395 3.1694 1.4424 7 6 4.1881 3.1277 0.7210 8 6 3.9807 2.6617 -0.7215 9 6 3.3589 1.2631 -0.7213 10 1 4.0242 0.5693 -0.2074 11 6 3.1515 0.7972 -2.1638 12 6 4.4900 0.6376 -2.8375 13 1 5.3979 0.8479 -2.2915 14 6 4.5557 0.2231 -4.1509 15 7 5.7238 0.0833 -4.7387 16 14 2.9855 -0.1400 -5.0952 17 1 2.5157 1.0972 -5.7690 18 1 3.2513 -1.1877 -6.1134 19 1 1.9410 -0.6181 -4.1541 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 2.8830 1.0776 1.9563 24 1 1.2569 1.8015 1.9563 25 1 2.9877 3.5012 2.4700 26 1 2.1740 3.8630 0.9286 27 1 4.8537 2.4340 1.2347 28 1 4.6313 4.1235 0.7213 29 1 4.9415 2.6316 -1.2353 30 1 3.3151 3.3554 -1.2352 31 1 2.6278 -0.1587 -2.1650 32 1 2.5593 1.5366 -2.7028 33 1 5.7700 -0.2080 -5.6628 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039089628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:48 Heat of formation + Delta-G solvation = -97.582287 kcal Electronic energy + Delta-G solvation = -13289.802656 eV Core-core repulsion = 11120.503113 eV Total energy + Delta-G solvation = -2169.299543 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32260 -37.34723 -35.27561 -33.20613 -30.87682 -29.03921 -27.18161 -24.75690 -23.08534 -21.68852 -20.71921 -18.93294 -17.45642 -16.51184 -16.27125 -15.93867 -15.24299 -15.01360 -14.58687 -14.46221 -14.02737 -13.72702 -13.47958 -12.95721 -12.61196 -12.43780 -12.17347 -11.95781 -11.81677 -11.69766 -11.52620 -11.34109 -11.08064 -10.89297 -10.72158 -10.15757 -8.27047 -6.28545 1.32285 1.35520 1.48333 2.36944 2.94357 3.08032 3.82923 3.92448 4.12263 4.27013 4.34686 4.46366 4.53406 4.57998 4.62238 4.66182 4.76912 4.84906 4.98520 5.02581 5.17154 5.19597 5.27453 5.39633 5.42467 5.48815 5.59667 5.65181 5.73737 6.33097 6.44856 6.77911 7.34723 8.89679 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.011949 C = 0.009453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.495638 B = 2342.661808 C = 2961.307740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.094 3.906 4 H 0.061 0.939 5 C -0.132 4.132 6 C -0.108 4.108 7 C -0.118 4.118 8 C -0.101 4.101 9 C -0.068 4.068 10 H 0.045 0.955 11 C -0.001 4.001 12 C -0.518 4.518 13 H 0.035 0.965 14 C 0.003 3.997 15 N -0.952 5.952 16 Si 0.946 3.054 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.253 1.253 20 H 0.092 0.908 21 H 0.058 0.942 22 H 0.038 0.962 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.464 5.444 11.723 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.037 3.963 4 H 0.079 0.921 5 C -0.170 4.170 6 C -0.146 4.146 7 C -0.156 4.156 8 C -0.139 4.139 9 C -0.087 4.087 10 H 0.063 0.937 11 C -0.038 4.038 12 C -0.556 4.556 13 H 0.053 0.947 14 C -0.194 4.194 15 N -0.594 5.594 16 Si 0.770 3.230 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.177 1.177 20 H 0.110 0.890 21 H 0.077 0.923 22 H 0.057 0.943 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.280 5.232 11.573 16.986 hybrid contribution -0.154 -0.311 -0.966 1.026 sum -11.434 4.920 10.607 16.354 Atomic orbital electron populations 1.22932 0.80234 1.03428 1.00524 1.87918 1.20951 1.28975 1.95163 1.22270 0.94072 0.83819 0.96152 0.92057 1.21982 1.01747 0.97710 0.95583 1.21472 0.95951 0.95770 1.01363 1.21592 0.98079 1.01390 0.94520 1.21431 1.00277 0.94842 0.97318 1.21038 0.95019 0.97203 0.95445 0.93681 1.19475 0.94938 0.95797 0.93639 1.21462 0.93183 1.43966 0.96963 0.94663 1.25965 0.99460 0.95040 0.98890 1.70068 1.26308 1.49695 1.13317 0.85716 0.80300 0.78620 0.78393 1.18963 1.20939 1.17734 0.88967 0.92298 0.94294 0.92216 0.90307 0.89645 0.91138 0.92705 0.90598 0.93714 0.92160 0.96855 0.97039 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 10.82 113.37 1.23 1.86 16 2 O -0.41 -14.55 9.59 -148.98 -1.43 -15.98 16 3 C 0.09 3.14 2.04 30.59 0.06 3.20 16 4 H 0.06 1.92 7.79 -2.39 -0.02 1.90 16 5 C -0.13 -3.44 5.54 30.59 0.17 -3.27 16 6 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 7 C -0.12 -3.30 5.92 30.59 0.18 -3.12 16 8 C -0.10 -3.74 5.02 30.61 0.15 -3.59 16 9 C -0.07 -2.84 1.88 -10.78 -0.02 -2.86 16 10 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 11 C 0.00 -0.06 3.44 29.84 0.10 0.05 16 12 C -0.52 -31.01 8.96 25.60 0.23 -30.78 16 13 H 0.04 2.30 7.30 -2.91 -0.02 2.28 16 14 C 0.00 0.15 5.47 84.66 0.46 0.62 16 15 N -0.95 -61.51 13.96 21.45 0.30 -61.21 16 16 Si 0.95 46.38 27.47 68.60 1.88 48.27 16 17 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 19 H -0.25 -11.89 6.54 99.48 0.65 -11.24 16 20 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 21 H 0.06 1.19 7.87 -2.38 -0.02 1.17 16 22 H 0.04 0.97 8.08 -2.39 -0.02 0.95 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.08 1.68 7.87 -2.39 -0.02 1.66 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.94 6.95 -2.39 -0.02 1.93 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.01 0.69 6.59 -2.39 -0.02 0.67 16 32 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 33 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -68.88 260.25 4.50 -64.38 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.99 Total: 4.68 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 2.75 Total: -40.15 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.30 Total: -61.21 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -1.43 Total: -15.98 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.27 kcal Total: -68.88 4.50 -64.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.201 kcal (2) G-P(sol) polarization free energy of solvation -68.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds