Wall clock time and date at job start Mon Mar 30 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99544 * 2 1 4 4 H 1.08993 * 109.47057 * 330.00343 * 3 2 1 5 5 C 1.52997 * 109.46915 * 90.00265 * 3 2 1 6 6 C 1.53005 * 109.47452 * 59.99882 * 5 3 2 7 7 C 1.52999 * 109.47159 * 59.99536 * 6 5 3 8 8 C 1.52997 * 109.47317 * 300.00546 * 7 6 5 9 9 C 1.53000 * 109.47060 * 59.99960 * 8 7 6 10 10 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 12 12 C 1.50709 * 109.46998 * 294.99525 * 11 9 8 13 13 H 1.08000 * 119.99684 * 0.02562 * 12 11 9 14 14 C 1.37870 * 120.00255 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99791 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00083 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47023 * 90.00435 * 16 14 12 18 18 H 1.48505 * 109.46768 * 210.00091 * 16 14 12 19 19 H 1.48491 * 109.47212 * 330.00023 * 16 14 12 20 20 H 1.09001 * 109.46593 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47407 * 299.99360 * 1 2 3 22 22 H 1.08993 * 109.47162 * 60.00283 * 1 2 3 23 23 H 1.09002 * 109.47153 * 179.97438 * 5 3 2 24 24 H 1.09001 * 109.47289 * 299.99958 * 5 3 2 25 25 H 1.09000 * 109.47360 * 180.02562 * 6 5 3 26 26 H 1.09002 * 109.46935 * 300.00125 * 6 5 3 27 27 H 1.08996 * 109.46929 * 179.97438 * 7 6 5 28 28 H 1.09002 * 109.46716 * 60.00455 * 7 6 5 29 29 H 1.09002 * 109.47153 * 299.99641 * 8 7 6 30 30 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 31 31 H 1.08994 * 109.47704 * 54.99481 * 11 9 8 32 32 H 1.09003 * 109.47255 * 175.00269 * 11 9 8 33 33 H 0.97002 * 119.99680 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2176 1.7714 1.4425 6 6 3.1515 0.7974 2.1638 7 6 4.5001 0.7552 1.4425 8 6 4.2927 0.2894 0.0000 9 6 3.3589 1.2634 -0.7212 10 1 3.8021 2.2591 -0.7212 11 6 3.1510 0.7972 -2.1635 12 6 4.4585 0.8724 -2.9092 13 1 5.3487 1.2178 -2.4046 14 6 4.5182 0.5004 -4.2354 15 7 3.4340 0.0803 -4.8500 16 14 6.1391 0.5930 -5.1594 17 1 6.8613 -0.6972 -5.0223 18 1 5.8752 0.8624 -6.5958 19 1 6.9689 1.6873 -4.5948 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 2.6613 2.7670 1.4425 24 1 1.2568 1.8014 1.9564 25 1 3.2989 1.1291 3.1916 26 1 2.7082 -0.1984 2.1637 27 1 5.1655 0.0617 1.9566 28 1 4.9434 1.7510 1.4425 29 1 3.8494 -0.7064 -0.0001 30 1 5.2535 0.2598 -0.5139 31 1 2.7909 -0.2315 -2.1646 32 1 2.4174 1.4395 -2.6509 33 1 3.4759 -0.1811 -5.7831 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039089630.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:51 Heat of formation + Delta-G solvation = -79.385220 kcal Electronic energy + Delta-G solvation = -13340.308938 eV Core-core repulsion = 11171.798479 eV Total energy + Delta-G solvation = -2168.510459 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.92370 -35.51364 -33.26143 -31.07151 -29.59436 -26.80199 -25.77043 -23.15332 -21.81810 -20.19504 -18.88003 -16.25742 -15.73196 -15.16152 -14.77913 -14.38990 -13.88073 -13.25373 -12.93445 -12.40793 -12.34820 -11.82822 -11.47869 -11.40127 -11.08338 -10.81568 -10.71257 -10.60873 -10.15592 -10.06029 -9.77526 -9.39163 -9.33412 -8.86996 -8.57970 -8.24795 -5.90813 -3.91773 3.36573 3.42638 3.45724 4.38355 4.52635 5.24291 5.28780 5.33186 5.44977 5.62439 5.73439 5.83682 5.92294 5.94490 6.01724 6.09107 6.14225 6.19443 6.34543 6.40053 6.62327 6.68983 6.81473 7.13013 7.23424 7.31330 7.77499 7.80974 8.00629 8.14275 8.53516 9.15318 9.70891 11.20556 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043365 B = 0.010279 C = 0.008796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.522340 B = 2723.325355 C = 3182.528093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.093 3.907 4 H 0.052 0.948 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.120 4.120 8 C -0.100 4.100 9 C -0.076 4.076 10 H 0.064 0.936 11 C 0.031 3.969 12 C -0.513 4.513 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 H 0.077 0.923 21 H 0.029 0.971 22 H 0.038 0.962 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.009 0.991 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 1.919 11.277 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C 0.035 3.965 4 H 0.070 0.930 5 C -0.177 4.177 6 C -0.147 4.147 7 C -0.158 4.158 8 C -0.137 4.137 9 C -0.095 4.095 10 H 0.082 0.918 11 C -0.006 4.006 12 C -0.551 4.551 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.200 1.200 20 H 0.096 0.904 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.027 0.973 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.924 1.692 11.105 11.607 hybrid contribution 0.565 0.299 -0.617 0.888 sum -2.359 1.991 10.488 10.932 Atomic orbital electron populations 1.22681 0.82818 1.01876 0.99095 1.87970 1.18008 1.28017 1.94784 1.22287 0.96272 0.84043 0.93874 0.93040 1.22036 0.99143 0.99295 0.97250 1.21384 0.96021 0.99969 0.97343 1.21602 0.96180 1.00535 0.97471 1.21404 1.00210 0.99407 0.92684 1.21320 0.91431 0.98868 0.97836 0.91786 1.19072 0.96501 0.97080 0.87981 1.21284 0.95358 1.43058 0.95435 0.92689 1.25011 0.96080 0.95622 0.97802 1.69980 1.27513 1.44980 1.11114 0.86663 0.84338 0.78317 0.79085 1.20760 1.21375 1.19967 0.90416 0.95201 0.94299 0.91626 0.92971 0.93399 0.91619 0.93014 0.92874 0.91987 0.91496 0.95630 0.97262 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.82 101.05 1.09 1.58 16 2 O -0.37 -7.01 8.42 -35.23 -0.30 -7.31 16 3 C 0.09 1.70 2.35 -26.73 -0.06 1.64 16 4 H 0.05 0.93 7.79 -51.93 -0.40 0.53 16 5 C -0.14 -2.10 5.63 -26.73 -0.15 -2.25 16 6 C -0.11 -1.62 5.78 -26.73 -0.15 -1.78 16 7 C -0.12 -1.92 5.92 -26.73 -0.16 -2.08 16 8 C -0.10 -1.98 4.87 -26.73 -0.13 -2.11 16 9 C -0.08 -1.61 1.97 -90.62 -0.18 -1.79 16 10 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 11 C 0.03 0.81 4.23 -27.88 -0.12 0.69 16 12 C -0.51 -14.64 8.41 -34.44 -0.29 -14.93 16 13 H 0.05 1.52 7.05 -52.49 -0.37 1.15 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 16 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.03 0.38 7.87 -51.93 -0.41 -0.03 16 22 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.71 7.87 -51.93 -0.41 0.30 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 30 H 0.07 1.42 6.95 -51.93 -0.36 1.05 16 31 H 0.03 0.74 7.83 -51.93 -0.41 0.33 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 262.11 15.07 3.95 3.95 Total: -1.00 -30.50 262.11 -6.55 -37.05 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -5.67 Total: -4.45 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -0.25 Total: -19.51 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.74 Total: -26.73 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.30 Total: -7.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.50 -6.55 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089630.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.332 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds