Wall clock time and date at job start Mon Mar 30 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99544 * 2 1 4 4 H 1.08993 * 109.47057 * 330.00343 * 3 2 1 5 5 C 1.52997 * 109.46915 * 90.00265 * 3 2 1 6 6 C 1.53005 * 109.47452 * 59.99882 * 5 3 2 7 7 C 1.52999 * 109.47159 * 59.99536 * 6 5 3 8 8 C 1.52997 * 109.47317 * 300.00546 * 7 6 5 9 9 C 1.53000 * 109.47060 * 59.99960 * 8 7 6 10 10 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 12 12 C 1.50709 * 109.46998 * 294.99525 * 11 9 8 13 13 H 1.08000 * 119.99684 * 0.02562 * 12 11 9 14 14 C 1.37870 * 120.00255 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99791 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00083 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47023 * 90.00435 * 16 14 12 18 18 H 1.48505 * 109.46768 * 210.00091 * 16 14 12 19 19 H 1.48491 * 109.47212 * 330.00023 * 16 14 12 20 20 H 1.09001 * 109.46593 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47407 * 299.99360 * 1 2 3 22 22 H 1.08993 * 109.47162 * 60.00283 * 1 2 3 23 23 H 1.09002 * 109.47153 * 179.97438 * 5 3 2 24 24 H 1.09001 * 109.47289 * 299.99958 * 5 3 2 25 25 H 1.09000 * 109.47360 * 180.02562 * 6 5 3 26 26 H 1.09002 * 109.46935 * 300.00125 * 6 5 3 27 27 H 1.08996 * 109.46929 * 179.97438 * 7 6 5 28 28 H 1.09002 * 109.46716 * 60.00455 * 7 6 5 29 29 H 1.09002 * 109.47153 * 299.99641 * 8 7 6 30 30 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 31 31 H 1.08994 * 109.47704 * 54.99481 * 11 9 8 32 32 H 1.09003 * 109.47255 * 175.00269 * 11 9 8 33 33 H 0.97002 * 119.99680 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2176 1.7714 1.4425 6 6 3.1515 0.7974 2.1638 7 6 4.5001 0.7552 1.4425 8 6 4.2927 0.2894 0.0000 9 6 3.3589 1.2634 -0.7212 10 1 3.8021 2.2591 -0.7212 11 6 3.1510 0.7972 -2.1635 12 6 4.4585 0.8724 -2.9092 13 1 5.3487 1.2178 -2.4046 14 6 4.5182 0.5004 -4.2354 15 7 3.4340 0.0803 -4.8500 16 14 6.1391 0.5930 -5.1594 17 1 6.8613 -0.6972 -5.0223 18 1 5.8752 0.8624 -6.5958 19 1 6.9689 1.6873 -4.5948 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 2.6613 2.7670 1.4425 24 1 1.2568 1.8014 1.9564 25 1 3.2989 1.1291 3.1916 26 1 2.7082 -0.1984 2.1637 27 1 5.1655 0.0617 1.9566 28 1 4.9434 1.7510 1.4425 29 1 3.8494 -0.7064 -0.0001 30 1 5.2535 0.2598 -0.5139 31 1 2.7909 -0.2315 -2.1646 32 1 2.4174 1.4395 -2.6509 33 1 3.4759 -0.1811 -5.7831 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039089630.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:51 Heat of formation + Delta-G solvation = -97.797691 kcal Electronic energy + Delta-G solvation = -13341.107362 eV Core-core repulsion = 11171.798479 eV Total energy + Delta-G solvation = -2169.308884 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.36967 -36.95587 -35.27471 -32.91795 -30.95548 -28.61952 -27.17419 -25.06062 -23.23400 -21.80469 -20.36856 -18.45694 -17.13331 -16.70094 -16.27658 -16.21314 -15.24445 -14.65303 -14.46515 -14.24436 -13.90290 -13.57197 -13.04128 -12.88892 -12.80578 -12.49502 -12.41317 -12.10685 -11.85178 -11.64277 -11.41042 -11.16605 -10.99270 -10.67797 -10.48659 -10.10468 -8.15864 -6.25637 1.39172 1.40921 1.51635 2.42352 3.04829 3.16813 3.92048 3.99059 4.05609 4.40363 4.45020 4.49870 4.54077 4.64289 4.72997 4.75058 4.84473 4.87919 5.00149 5.10137 5.22226 5.35206 5.36075 5.50120 5.55353 5.56735 5.66144 5.83958 5.93565 6.30781 6.48851 6.91235 7.42317 8.96169 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043365 B = 0.010279 C = 0.008796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.522340 B = 2723.325355 C = 3182.528093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.092 3.908 4 H 0.046 0.954 5 C -0.132 4.132 6 C -0.107 4.107 7 C -0.114 4.114 8 C -0.095 4.095 9 C -0.074 4.074 10 H 0.067 0.933 11 C 0.041 3.959 12 C -0.530 4.530 13 H 0.061 0.939 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.962 3.038 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.261 1.261 20 H 0.091 0.909 21 H 0.058 0.942 22 H 0.029 0.971 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.046 0.954 31 H -0.012 1.012 32 H -0.021 1.021 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 2.713 12.994 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.035 3.965 4 H 0.065 0.935 5 C -0.170 4.170 6 C -0.144 4.144 7 C -0.151 4.151 8 C -0.132 4.132 9 C -0.092 4.092 10 H 0.085 0.915 11 C 0.004 3.996 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.201 4.201 15 N -0.577 5.577 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.185 1.185 20 H 0.109 0.891 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.007 0.993 32 H -0.003 1.003 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.082 2.493 12.840 13.245 hybrid contribution 0.239 0.018 -1.185 1.209 sum -1.843 2.511 11.655 12.064 Atomic orbital electron populations 1.22865 0.80875 1.03147 1.00011 1.87922 1.20231 1.28505 1.95077 1.22234 0.94260 0.83966 0.96075 0.93549 1.21990 1.00656 0.99811 0.94510 1.21379 0.94763 0.99482 0.98777 1.21550 0.97688 1.01401 0.94477 1.21295 0.98345 0.98098 0.95478 1.21204 0.94135 0.98958 0.94921 0.91477 1.18894 0.94923 0.94283 0.91540 1.21689 0.96221 1.42835 0.96042 0.92039 1.25986 1.00071 0.95094 0.98958 1.70129 1.30064 1.45950 1.11557 0.85496 0.79503 0.78839 0.77519 1.19990 1.20867 1.18535 0.89100 0.92315 0.95241 0.90240 0.90731 0.90154 0.92705 0.91373 0.91658 0.94105 0.93569 0.99329 1.00311 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.82 113.37 1.23 2.03 16 2 O -0.40 -15.15 8.42 -148.98 -1.25 -16.40 16 3 C 0.09 3.33 2.35 30.59 0.07 3.40 16 4 H 0.05 1.68 7.79 -2.39 -0.02 1.66 16 5 C -0.13 -3.57 5.63 30.60 0.17 -3.40 16 6 C -0.11 -2.80 5.78 30.60 0.18 -2.62 16 7 C -0.11 -3.36 5.92 30.59 0.18 -3.17 16 8 C -0.09 -3.76 4.87 30.59 0.15 -3.61 16 9 C -0.07 -3.17 1.97 -10.79 -0.02 -3.19 16 10 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 11 C 0.04 2.25 4.23 29.85 0.13 2.38 16 12 C -0.53 -30.98 8.41 25.60 0.22 -30.77 16 13 H 0.06 3.43 7.05 -2.91 -0.02 3.41 16 14 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 15 N -0.94 -59.05 13.29 21.45 0.28 -58.76 16 16 Si 0.96 45.53 29.54 68.60 2.03 47.55 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 21 H 0.06 1.37 7.87 -2.39 -0.02 1.35 16 22 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 23 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.07 1.72 7.87 -2.39 -0.02 1.70 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 1.57 7.68 -2.39 -0.02 1.56 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.76 7.68 -2.39 -0.02 1.74 16 30 H 0.05 1.97 6.95 -2.39 -0.02 1.96 16 31 H -0.01 -0.73 7.83 -2.39 -0.02 -0.75 16 32 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 33 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -67.38 262.11 4.86 -62.52 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 1.05 Total: 3.84 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 2.76 Total: -38.74 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.28 Total: -58.76 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -1.25 Total: -16.40 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -67.38 4.86 -62.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089630.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.278 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds