Wall clock time and date at job start Mon Mar 30 2020 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46839 * 111.00222 * 294.21135 * 11 10 9 13 13 C 1.53034 * 109.52552 * 174.16216 * 12 11 10 14 14 C 1.53123 * 109.28182 * 59.17780 * 13 12 11 15 15 C 1.53120 * 109.16070 * 302.35293 * 14 13 12 16 16 H 1.09008 * 109.53162 * 297.68717 * 15 14 13 17 17 N 1.46891 * 109.50543 * 177.59263 * 15 14 13 18 18 C 1.46849 * 110.99649 * 169.99929 * 11 10 9 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 1.09006 * 109.46266 * 294.17473 * 12 11 10 25 25 H 1.09002 * 109.46276 * 54.14664 * 12 11 10 26 26 H 1.09006 * 109.50444 * 299.24199 * 13 12 11 27 27 H 1.09002 * 109.53860 * 179.13912 * 13 12 11 28 28 H 1.08993 * 109.52832 * 182.44067 * 14 13 12 29 29 H 1.09005 * 109.51783 * 62.25186 * 14 13 12 30 30 H 1.00900 * 111.00365 * 60.19324 * 17 15 14 31 31 H 1.00898 * 111.00175 * 184.15129 * 17 15 14 32 32 H 1.08991 * 109.46839 * 305.85721 * 18 11 10 33 33 H 1.09005 * 109.46224 * 65.84006 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 0.7614 -5.1087 1.2526 13 6 -0.1029 -6.3682 1.1595 14 6 0.7968 -7.5815 0.9083 15 6 1.6021 -7.3532 -0.3739 16 1 0.9214 -7.2645 -1.2207 17 7 2.5101 -8.4871 -0.5912 18 6 2.4169 -6.0650 -0.2363 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8714 -3.6047 -0.8890 23 1 2.8726 -3.6039 0.8910 24 1 1.4597 -5.2082 2.0836 25 1 0.1224 -4.2411 1.4171 26 1 -0.8109 -6.2638 0.3372 27 1 -0.6477 -6.5063 2.0934 28 1 0.1819 -8.4746 0.7982 29 1 1.4790 -7.7092 1.7489 30 1 1.9953 -9.3498 -0.6852 31 1 3.1004 -8.3290 -1.3941 32 1 2.9803 -5.8921 -1.1531 33 1 3.1073 -6.1601 0.6018 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041029869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:46 Heat of formation + Delta-G solvation = -14.932773 kcal Electronic energy + Delta-G solvation = -12868.465052 eV Core-core repulsion = 10735.042212 eV Total energy + Delta-G solvation = -2133.422840 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.79759 -34.95148 -32.99889 -32.04292 -29.45836 -27.80891 -25.06253 -22.78013 -22.31671 -19.92568 -19.35508 -16.48943 -15.58052 -15.26266 -15.02735 -14.55012 -14.39249 -13.86123 -13.03734 -12.80490 -12.54275 -12.08420 -11.91705 -11.47022 -11.11988 -10.90712 -10.69036 -10.54899 -10.42794 -10.10007 -9.77805 -9.31316 -9.09154 -8.70927 -8.31175 -7.66940 -5.97983 -4.00263 3.33358 3.39357 3.42728 4.21698 4.48631 4.79280 4.96235 5.09826 5.32431 5.38184 5.50184 5.66516 5.78905 5.95607 6.02028 6.07422 6.12092 6.21248 6.30809 6.45126 6.57254 6.60205 6.99033 7.11135 7.37903 7.55697 7.64350 7.83724 7.92939 8.10780 8.45746 9.07030 9.63254 11.13453 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.071188 B = 0.007017 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.230460 B = 3989.239404 C = 4245.530756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.065 3.935 11 N -0.539 5.539 12 C 0.053 3.947 13 C -0.116 4.116 14 C -0.110 4.110 15 C 0.092 3.908 16 H 0.043 0.957 17 N -0.850 5.850 18 C 0.063 3.937 19 H 0.260 0.740 20 H 0.024 0.976 21 H 0.018 0.982 22 H 0.060 0.940 23 H 0.019 0.981 24 H 0.026 0.974 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.339 0.661 31 H 0.340 0.660 32 H 0.066 0.934 33 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.761 -13.729 0.315 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.062 4.062 11 N -0.264 5.264 12 C -0.075 4.075 13 C -0.154 4.154 14 C -0.148 4.148 15 C -0.019 4.019 16 H 0.061 0.939 17 N -0.379 5.379 18 C -0.066 4.066 19 H 0.070 0.930 20 H 0.043 0.957 21 H 0.036 0.964 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.084 0.916 33 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.570 -13.406 0.656 13.513 hybrid contribution 0.574 0.819 -0.295 1.043 sum 2.144 -12.587 0.361 12.773 Atomic orbital electron populations 1.69970 1.06027 1.26558 1.50742 1.24991 0.94827 0.99164 0.95321 0.86595 0.79815 0.83486 0.78102 1.20646 1.21226 1.19929 1.21206 0.92996 0.91088 1.50784 0.92805 1.19106 0.93985 0.90081 0.97788 1.22314 0.96718 0.88255 0.98920 1.61954 1.27446 1.02265 1.34722 1.22121 0.96830 0.98394 0.90152 1.21585 0.98004 0.94113 1.01720 1.21580 0.97955 0.97769 0.97541 1.21345 0.93076 0.90238 0.97255 0.93903 1.58682 1.26320 1.04791 1.48154 1.21969 0.93964 0.90148 1.00535 0.93010 0.95746 0.96416 0.92193 0.96231 0.95620 0.89443 0.91250 0.91680 0.92607 0.91720 0.84918 0.84779 0.91571 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 10 C 0.06 1.42 4.90 -3.82 -0.02 1.40 16 11 N -0.54 -10.22 4.66 -234.67 -1.09 -11.31 16 12 C 0.05 0.93 5.29 -3.84 -0.02 0.91 16 13 C -0.12 -1.65 6.09 -26.65 -0.16 -1.81 16 14 C -0.11 -1.43 5.58 -26.61 -0.15 -1.57 16 15 C 0.09 1.24 3.41 -67.63 -0.23 1.01 16 16 H 0.04 0.61 8.14 -51.92 -0.42 0.18 16 17 N -0.85 -9.38 9.25 -4.60 -0.04 -9.42 16 18 C 0.06 1.00 5.00 -3.83 -0.02 0.99 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.02 0.49 6.43 -51.93 -0.33 0.16 16 22 H 0.06 1.29 7.99 -51.93 -0.41 0.88 16 23 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 1.72 6.21 -51.93 -0.32 1.39 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.34 3.07 9.04 -39.29 -0.36 2.72 16 31 H 0.34 3.34 8.99 -39.29 -0.35 2.98 16 32 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 263.79 15.07 3.98 3.98 Total: -1.00 -30.28 263.79 -8.13 -38.41 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.54 Total: 0.13 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.15 Total: -12.21 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.40 Total: -47.13 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.28 -8.13 -38.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041029869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.478 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds