Wall clock time and date at job start Mon Mar 30 2020 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46839 * 111.00222 * 294.21135 * 11 10 9 13 13 C 1.53034 * 109.52552 * 174.16216 * 12 11 10 14 14 C 1.53123 * 109.28182 * 59.17780 * 13 12 11 15 15 C 1.53120 * 109.16070 * 302.35293 * 14 13 12 16 16 H 1.09008 * 109.53162 * 297.68717 * 15 14 13 17 17 N 1.46891 * 109.50543 * 177.59263 * 15 14 13 18 18 C 1.46849 * 110.99649 * 169.99929 * 11 10 9 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 1.09006 * 109.46266 * 294.17473 * 12 11 10 25 25 H 1.09002 * 109.46276 * 54.14664 * 12 11 10 26 26 H 1.09006 * 109.50444 * 299.24199 * 13 12 11 27 27 H 1.09002 * 109.53860 * 179.13912 * 13 12 11 28 28 H 1.08993 * 109.52832 * 182.44067 * 14 13 12 29 29 H 1.09005 * 109.51783 * 62.25186 * 14 13 12 30 30 H 1.00900 * 111.00365 * 60.19324 * 17 15 14 31 31 H 1.00898 * 111.00175 * 184.15129 * 17 15 14 32 32 H 1.08991 * 109.46839 * 305.85721 * 18 11 10 33 33 H 1.09005 * 109.46224 * 65.84006 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 0.7614 -5.1087 1.2526 13 6 -0.1029 -6.3682 1.1595 14 6 0.7968 -7.5815 0.9083 15 6 1.6021 -7.3532 -0.3739 16 1 0.9214 -7.2645 -1.2207 17 7 2.5101 -8.4871 -0.5912 18 6 2.4169 -6.0650 -0.2363 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8714 -3.6047 -0.8890 23 1 2.8726 -3.6039 0.8910 24 1 1.4597 -5.2082 2.0836 25 1 0.1224 -4.2411 1.4171 26 1 -0.8109 -6.2638 0.3372 27 1 -0.6477 -6.5063 2.0934 28 1 0.1819 -8.4746 0.7982 29 1 1.4790 -7.7092 1.7489 30 1 1.9953 -9.3498 -0.6852 31 1 3.1004 -8.3290 -1.3941 32 1 2.9803 -5.8921 -1.1531 33 1 3.1073 -6.1601 0.6018 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041029869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:46 Heat of formation + Delta-G solvation = -37.405060 kcal Electronic energy + Delta-G solvation = -12869.439524 eV Core-core repulsion = 10735.042212 eV Total energy + Delta-G solvation = -2134.397312 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.13032 -36.43375 -34.88562 -33.41037 -31.30041 -29.04993 -26.90677 -24.46014 -23.61361 -21.67710 -20.57733 -18.61846 -16.74183 -16.68991 -16.45168 -16.15215 -15.84931 -15.33957 -14.56336 -14.31162 -14.06247 -13.86031 -13.30229 -13.08616 -12.79514 -12.64428 -12.45396 -12.00896 -11.82221 -11.67584 -11.44049 -11.22076 -11.06764 -10.54109 -9.62626 -9.21121 -8.20761 -6.32384 1.39958 1.41754 1.52791 2.39765 2.94185 3.12501 3.66320 3.81603 3.96073 4.12465 4.28218 4.38903 4.48158 4.56364 4.59665 4.77535 4.86422 4.97233 4.98979 5.04425 5.08796 5.19908 5.40492 5.45131 5.65436 5.77470 6.08692 6.15963 6.30263 6.37396 6.64483 6.84398 7.36731 8.91501 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.071188 B = 0.007017 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.230460 B = 3989.239404 C = 4245.530756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.037 3.963 10 C 0.080 3.920 11 N -0.549 5.549 12 C 0.051 3.949 13 C -0.109 4.109 14 C -0.105 4.105 15 C 0.099 3.901 16 H 0.038 0.962 17 N -0.847 5.847 18 C 0.063 3.937 19 H 0.264 0.736 20 H -0.008 1.008 21 H -0.004 1.004 22 H 0.063 0.937 23 H 0.017 0.983 24 H 0.026 0.974 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.354 0.646 31 H 0.348 0.652 32 H 0.069 0.931 33 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -14.633 0.332 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.048 4.048 11 N -0.274 5.274 12 C -0.077 4.077 13 C -0.147 4.147 14 C -0.143 4.143 15 C -0.013 4.013 16 H 0.056 0.944 17 N -0.379 5.379 18 C -0.065 4.065 19 H 0.073 0.927 20 H 0.011 0.989 21 H 0.014 0.986 22 H 0.081 0.919 23 H 0.035 0.965 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.088 0.912 33 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.473 -14.346 0.668 14.573 hybrid contribution 0.272 1.061 -0.302 1.137 sum 2.745 -13.284 0.366 13.570 Atomic orbital electron populations 1.70107 1.07839 1.27834 1.51369 1.25968 0.95763 1.03341 0.94535 0.85412 0.78594 0.78246 0.78565 1.19651 1.20601 1.18793 1.21628 0.93507 0.92319 1.51067 0.92264 1.18922 0.94165 0.91830 0.95123 1.21962 0.95424 0.88491 0.98879 1.61886 1.27883 1.02063 1.35561 1.22135 0.96748 0.99129 0.89642 1.21551 0.97619 0.92912 1.02663 1.21546 0.97843 0.97862 0.97036 1.21187 0.92888 0.89705 0.97475 0.94409 1.58609 1.25980 1.04551 1.48800 1.22034 0.93823 0.90253 1.00404 0.92697 0.98919 0.98597 0.91889 0.96473 0.95562 0.92484 0.91775 0.89643 0.90008 0.91916 0.83248 0.83875 0.91241 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 2 C 0.00 0.11 5.46 84.66 0.46 0.58 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.04 2.04 4.90 29.85 0.15 2.19 16 10 C 0.08 3.57 4.90 86.30 0.42 3.99 16 11 N -0.55 -20.95 4.66 -896.36 -4.17 -25.12 16 12 C 0.05 1.83 5.29 86.33 0.46 2.29 16 13 C -0.11 -2.96 6.09 30.65 0.19 -2.78 16 14 C -0.10 -2.44 5.58 30.68 0.17 -2.27 16 15 C 0.10 2.45 3.41 44.97 0.15 2.60 16 16 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 17 N -0.85 -16.35 9.25 -168.46 -1.56 -17.91 16 18 C 0.06 1.95 5.00 86.33 0.43 2.39 16 19 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 20 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 21 H 0.00 -0.25 6.43 -2.39 -0.02 -0.26 16 22 H 0.06 2.74 7.99 -2.39 -0.02 2.72 16 23 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 24 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.06 2.35 6.21 -2.39 -0.01 2.34 16 26 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.35 5.25 9.04 -89.69 -0.81 4.44 16 31 H 0.35 5.93 8.99 -89.70 -0.81 5.13 16 32 H 0.07 2.08 8.01 -2.39 -0.02 2.06 16 33 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -65.30 263.79 -1.29 -66.59 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -0.53 Total: 9.72 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 2.66 Total: -22.75 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -5.45 Total: -100.41 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.30 -1.29 -66.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041029869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.189 kcal (2) G-P(sol) polarization free energy of solvation -65.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds