Wall clock time and date at job start Mon Mar 30 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.46850 * 111.00191 * 66.04522 * 11 10 9 13 13 C 1.53036 * 109.52573 * 185.83550 * 12 11 10 14 14 C 1.53119 * 109.27947 * 300.82219 * 13 12 11 15 15 C 1.53119 * 109.15969 * 57.65064 * 14 13 12 16 16 H 1.09003 * 109.50141 * 62.29246 * 15 14 13 17 17 N 1.46904 * 109.50154 * 182.40405 * 15 14 13 18 18 C 1.46848 * 110.99868 * 190.25349 * 11 10 9 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 21 21 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 22 22 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 23 23 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 24 24 H 1.08996 * 109.46178 * 305.85667 * 12 11 10 25 25 H 1.09002 * 109.46327 * 65.81810 * 12 11 10 26 26 H 1.09004 * 109.49668 * 60.76183 * 13 12 11 27 27 H 1.08996 * 109.50299 * 180.87761 * 13 12 11 28 28 H 1.08997 * 109.52027 * 177.55609 * 14 13 12 29 29 H 1.09000 * 109.51717 * 297.74719 * 14 13 12 30 30 H 1.00896 * 110.99812 * 300.00035 * 17 15 14 31 31 H 1.00901 * 110.99672 * 63.95591 * 17 15 14 32 32 H 1.08997 * 109.46076 * 294.17770 * 18 11 10 33 33 H 1.08998 * 109.46082 * 54.14339 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 0.7653 -5.1121 -1.2514 13 6 -0.0992 -6.3714 -1.1576 14 6 0.7998 -7.5839 -0.9005 15 6 1.6010 -7.3521 0.3837 16 1 0.9172 -7.2610 1.2277 17 7 2.5085 -8.4856 0.6068 18 6 2.4162 -6.0644 0.2452 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6242 -2.5567 0.8904 21 1 0.6248 -2.5571 -0.8896 22 1 2.8720 -3.6043 -0.8895 23 1 2.8721 -3.6042 0.8905 24 1 0.1269 -4.2450 -1.4202 25 1 1.4662 -5.2136 -2.0800 26 1 -0.8097 -6.2647 -0.3378 27 1 -0.6406 -6.5116 -2.0932 28 1 0.1844 -8.4766 -0.7898 29 1 1.4845 -7.7138 -1.7386 30 1 1.9935 -9.3484 0.6983 31 1 3.1943 -8.5502 -0.1304 32 1 3.1093 -6.1615 -0.5904 33 1 2.9768 -5.8889 1.1634 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041029870.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:48 Heat of formation + Delta-G solvation = -19.662470 kcal Electronic energy + Delta-G solvation = -12909.728844 eV Core-core repulsion = 10776.100909 eV Total energy + Delta-G solvation = -2133.627935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.97160 -35.17949 -33.23731 -32.06710 -29.31714 -27.73519 -24.78514 -22.79934 -22.38429 -20.33184 -19.66129 -16.77620 -16.04042 -15.58930 -14.61949 -14.34968 -13.74953 -13.67015 -13.56304 -13.24189 -12.82697 -12.33446 -11.92028 -11.36731 -11.13199 -10.88486 -10.85045 -10.73811 -10.32296 -10.11434 -9.97015 -9.60813 -8.74370 -8.53656 -8.27967 -7.79592 -6.33166 -4.01599 3.45840 3.48173 3.66813 4.16768 4.57931 4.68683 4.86709 4.95873 5.15879 5.35590 5.44703 5.53528 5.64631 5.78342 5.82493 5.92237 6.04111 6.15861 6.20689 6.30191 6.42808 6.47976 6.84388 7.04041 7.28582 7.35986 7.45122 7.71160 7.74944 8.27414 8.49765 8.92061 9.70663 11.08029 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.071934 B = 0.007044 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.153365 B = 3974.257876 C = 4225.776757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.604 4.604 8 H 0.047 0.953 9 C 0.015 3.985 10 C 0.072 3.928 11 N -0.539 5.539 12 C 0.053 3.947 13 C -0.113 4.113 14 C -0.152 4.152 15 C 0.093 3.907 16 H 0.089 0.911 17 N -0.845 5.845 18 C 0.064 3.936 19 H 0.269 0.731 20 H 0.016 0.984 21 H 0.008 0.992 22 H 0.020 0.980 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.024 0.976 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.340 0.660 31 H 0.336 0.664 32 H 0.023 0.977 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -14.334 -2.155 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.022 4.022 10 C -0.055 4.055 11 N -0.264 5.264 12 C -0.075 4.075 13 C -0.151 4.151 14 C -0.191 4.191 15 C -0.019 4.019 16 H 0.107 0.893 17 N -0.373 5.373 18 C -0.064 4.064 19 H 0.080 0.920 20 H 0.034 0.966 21 H 0.026 0.974 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.042 0.958 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.041 0.959 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.054 -12.289 -1.085 12.507 hybrid contribution 0.460 -2.125 -1.659 2.735 sum 2.515 -14.414 -2.744 14.886 Atomic orbital electron populations 1.70769 1.06868 1.30670 1.46592 1.25828 0.96552 1.02640 0.93802 0.83543 0.74873 0.75359 0.76468 1.20755 1.21546 1.21425 1.22019 0.94237 0.92085 1.55903 0.93468 1.19228 0.94636 0.91875 0.96477 1.22166 0.96394 0.87753 0.99182 1.61947 1.27784 1.02388 1.34254 1.22117 0.96850 0.98338 0.90221 1.21530 0.97991 0.93908 1.01719 1.22432 0.99274 0.98524 0.98901 1.21490 0.93395 0.90419 0.96611 0.89320 1.58857 1.19118 1.06684 1.52614 1.21980 0.93680 0.90204 1.00577 0.92027 0.96561 0.97429 0.96151 0.91848 0.89741 0.95771 0.91008 0.91933 0.92334 0.92682 0.84795 0.85167 0.95919 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.49 13.65 55.43 0.76 -27.73 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 25.70 29.90 -169.99 -5.08 20.61 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.60 -17.63 9.11 -34.44 -0.31 -17.94 16 8 H 0.05 1.35 7.74 -52.48 -0.41 0.94 16 9 C 0.02 0.40 4.22 -27.88 -0.12 0.28 16 10 C 0.07 1.58 4.90 -3.82 -0.02 1.56 16 11 N -0.54 -10.10 4.66 -234.67 -1.09 -11.20 16 12 C 0.05 0.91 5.29 -3.83 -0.02 0.89 16 13 C -0.11 -1.55 6.09 -26.65 -0.16 -1.71 16 14 C -0.15 -1.80 5.57 -26.61 -0.15 -1.95 16 15 C 0.09 1.20 3.41 -67.63 -0.23 0.97 16 16 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 17 N -0.84 -9.14 9.26 -4.60 -0.04 -9.18 16 18 C 0.06 1.02 5.00 -3.83 -0.02 1.00 16 19 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 20 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 21 H 0.01 0.21 6.30 -51.93 -0.33 -0.12 16 22 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 23 H 0.06 1.40 7.98 -51.93 -0.41 0.98 16 24 H 0.08 1.62 6.22 -51.93 -0.32 1.30 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.34 2.99 9.04 -39.29 -0.36 2.64 16 31 H 0.34 3.28 8.98 -39.29 -0.35 2.93 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16 LS Contribution 262.47 15.07 3.96 3.96 Total: -1.00 -30.93 262.47 -8.12 -39.04 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.48 Total: 1.03 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.13 Total: -16.53 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.38 Total: -48.11 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.93 -8.12 -39.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041029870.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.381 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds