Wall clock time and date at job start Mon Mar 30 2020 02:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99674 * 2 1 4 4 H 1.48506 * 109.47267 * 270.00321 * 3 2 1 5 5 H 1.48503 * 109.47223 * 30.00182 * 3 2 1 6 6 H 1.48501 * 109.47299 * 150.00389 * 3 2 1 7 7 C 1.37873 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99861 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00196 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47354 * 179.97438 * 9 7 2 11 11 C 1.46843 * 110.99970 * 294.20914 * 10 9 7 12 12 C 1.53042 * 109.52278 * 174.15687 * 11 10 9 13 13 C 1.53127 * 109.27596 * 59.17923 * 12 11 10 14 14 C 1.53123 * 109.15019 * 302.34079 * 13 12 11 15 15 H 1.08997 * 109.51083 * 297.71779 * 14 13 12 16 16 C 1.53000 * 109.49034 * 177.60705 * 14 13 12 17 17 N 1.46906 * 109.47392 * 65.20026 * 16 14 13 18 18 C 1.46847 * 110.99982 * 169.99549 * 10 9 7 19 19 H 0.96995 * 120.00224 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46915 * 59.99307 * 9 7 2 21 21 H 1.09003 * 109.46819 * 299.99778 * 9 7 2 22 22 H 1.08993 * 109.46313 * 294.17341 * 11 10 9 23 23 H 1.09004 * 109.46429 * 54.14692 * 11 10 9 24 24 H 1.08997 * 109.50758 * 179.11703 * 12 11 10 25 25 H 1.08999 * 109.50480 * 299.24136 * 12 11 10 26 26 H 1.09003 * 109.52393 * 62.24889 * 13 12 11 27 27 H 1.08998 * 109.52208 * 182.44010 * 13 12 11 28 28 H 1.09001 * 109.47029 * 185.20441 * 16 14 13 29 29 H 1.09003 * 109.47157 * 305.19670 * 16 14 13 30 30 H 1.00900 * 110.99853 * 180.02562 * 17 16 14 31 31 H 1.00892 * 110.99546 * 303.95173 * 17 16 14 32 32 H 1.09002 * 109.46481 * 305.85957 * 18 10 9 33 33 H 1.08994 * 109.46283 * 65.83811 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 3.6463 -3.2627 1.2500 12 6 4.0420 -4.7381 1.1561 13 6 5.5490 -4.8423 0.9056 14 6 5.8990 -4.0812 -0.3761 15 1 5.3892 -4.5405 -1.2230 16 6 7.4115 -4.1299 -0.6019 17 7 7.8247 -5.5170 -0.8537 18 6 5.4497 -2.6249 -0.2377 19 1 -0.4850 0.8400 0.0004 20 1 3.8745 -0.6806 0.8905 21 1 3.8752 -0.6795 -0.8895 22 1 4.1751 -2.7971 2.0815 23 1 2.5715 -3.1848 1.4140 24 1 3.7926 -5.2420 2.0899 25 1 3.5030 -5.2078 0.3332 26 1 6.0890 -4.4074 1.7467 27 1 5.8282 -5.8901 0.7948 28 1 7.6706 -3.5118 -1.4615 29 1 7.9234 -3.7534 0.2837 30 1 8.8204 -5.5757 -1.0056 31 1 7.5380 -6.1222 -0.0991 32 1 5.6848 -2.0836 -1.1541 33 1 5.9702 -2.1624 0.6009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044531445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:49 Heat of formation + Delta-G solvation = -10.723274 kcal Electronic energy + Delta-G solvation = -13045.375265 eV Core-core repulsion = 10912.134962 eV Total energy + Delta-G solvation = -2133.240303 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.72077 -35.25946 -32.95720 -31.74307 -30.25128 -27.51574 -24.83296 -23.22431 -21.83906 -20.16510 -19.23466 -16.76851 -16.04517 -15.19522 -14.78104 -14.29349 -14.05163 -13.69412 -13.45388 -13.06107 -12.59581 -12.24622 -12.12481 -11.44583 -11.37687 -10.79637 -10.69824 -10.56731 -10.31686 -10.00352 -9.85596 -9.67808 -9.21298 -8.74270 -8.55031 -7.30967 -6.03525 -4.00585 3.29385 3.36561 3.38762 4.43241 4.45772 4.83794 4.98782 5.16236 5.23762 5.29639 5.53607 5.62016 5.81967 5.83439 5.89308 5.99649 6.15398 6.19013 6.28816 6.42107 6.57506 6.72790 6.75432 6.91995 7.03633 7.08275 7.34998 7.62929 7.96512 8.12134 8.69113 9.05218 9.58421 11.09625 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.056553 B = 0.008559 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.993409 B = 3270.547834 C = 3599.809970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.508 4.508 8 H 0.081 0.919 9 C 0.162 3.838 10 N -0.526 5.526 11 C 0.064 3.936 12 C -0.116 4.116 13 C -0.113 4.113 14 C -0.083 4.083 15 H 0.086 0.914 16 C 0.067 3.933 17 N -0.850 5.850 18 C 0.060 3.940 19 H 0.263 0.737 20 H -0.013 1.013 21 H 0.024 0.976 22 H 0.017 0.983 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.336 0.664 31 H 0.339 0.661 32 H 0.067 0.933 33 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.695 -7.577 1.893 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.251 5.251 11 C -0.065 4.065 12 C -0.154 4.154 13 C -0.151 4.151 14 C -0.103 4.103 15 H 0.105 0.895 16 C -0.065 4.065 17 N -0.380 5.380 18 C -0.069 4.069 19 H 0.073 0.927 20 H 0.004 0.996 21 H 0.042 0.958 22 H 0.035 0.965 23 H 0.107 0.893 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.086 0.914 33 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.823 -7.638 0.871 14.951 hybrid contribution 1.378 1.580 1.530 2.595 sum 14.201 -6.058 2.401 15.625 Atomic orbital electron populations 1.69894 1.06097 1.26796 1.51217 1.24900 0.94737 0.98825 0.94902 0.86868 0.80270 0.84063 0.78591 1.20130 1.21210 1.19357 1.21052 0.88748 0.94733 1.50122 0.90086 1.20158 0.97077 0.84225 0.94959 1.61804 1.10176 1.18632 1.34441 1.21977 1.02139 0.92414 0.89933 1.21605 0.95181 0.97356 1.01275 1.21620 0.97137 0.99320 0.97024 1.21205 0.93817 0.96344 0.98892 0.89516 1.21815 0.95833 0.89495 0.99312 1.58741 1.19989 1.08780 1.50496 1.22025 0.90071 0.95044 0.99792 0.92689 0.99558 0.95822 0.96520 0.89347 0.92362 0.91199 0.93102 0.92433 0.91070 0.95945 0.85181 0.84789 0.91449 0.96317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.51 -14.67 8.98 -34.44 -0.31 -14.98 16 8 H 0.08 2.54 7.36 -52.48 -0.39 2.15 16 9 C 0.16 4.04 3.79 -4.98 -0.02 4.02 16 10 N -0.53 -11.35 4.65 -236.12 -1.10 -12.44 16 11 C 0.06 1.25 5.29 -3.83 -0.02 1.23 16 12 C -0.12 -1.83 6.09 -26.64 -0.16 -1.99 16 13 C -0.11 -1.55 5.00 -26.60 -0.13 -1.68 16 14 C -0.08 -1.23 2.56 -90.54 -0.23 -1.46 16 15 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 16 C 0.07 0.80 6.25 -3.82 -0.02 0.78 16 17 N -0.85 -8.98 9.62 -10.36 -0.10 -9.08 16 18 C 0.06 1.06 4.74 -3.84 -0.02 1.04 16 19 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 20 H -0.01 -0.33 7.18 -51.93 -0.37 -0.71 16 21 H 0.02 0.59 7.41 -51.93 -0.38 0.20 16 22 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.09 1.95 6.70 -51.93 -0.35 1.61 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.68 6.80 -51.93 -0.35 0.33 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.34 2.83 9.08 -39.29 -0.36 2.48 16 31 H 0.34 3.26 7.31 -39.30 -0.29 2.98 16 32 H 0.07 1.17 8.02 -51.93 -0.42 0.76 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 257.94 15.07 3.89 3.89 Total: -1.00 -30.65 257.94 -7.67 -38.33 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.45 Total: 0.43 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -1.02 Total: -11.15 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.42 Total: -48.59 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.65 -7.67 -38.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044531445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.603 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds