Wall clock time and date at job start Mon Mar 30 2020 02:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99674 * 2 1 4 4 H 1.48506 * 109.47267 * 270.00321 * 3 2 1 5 5 H 1.48503 * 109.47223 * 30.00182 * 3 2 1 6 6 H 1.48501 * 109.47299 * 150.00389 * 3 2 1 7 7 C 1.37873 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99861 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00196 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47354 * 179.97438 * 9 7 2 11 11 C 1.46843 * 110.99970 * 294.20914 * 10 9 7 12 12 C 1.53042 * 109.52278 * 174.15687 * 11 10 9 13 13 C 1.53127 * 109.27596 * 59.17923 * 12 11 10 14 14 C 1.53123 * 109.15019 * 302.34079 * 13 12 11 15 15 H 1.08997 * 109.51083 * 297.71779 * 14 13 12 16 16 C 1.53000 * 109.49034 * 177.60705 * 14 13 12 17 17 N 1.46906 * 109.47392 * 65.20026 * 16 14 13 18 18 C 1.46847 * 110.99982 * 169.99549 * 10 9 7 19 19 H 0.96995 * 120.00224 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46915 * 59.99307 * 9 7 2 21 21 H 1.09003 * 109.46819 * 299.99778 * 9 7 2 22 22 H 1.08993 * 109.46313 * 294.17341 * 11 10 9 23 23 H 1.09004 * 109.46429 * 54.14692 * 11 10 9 24 24 H 1.08997 * 109.50758 * 179.11703 * 12 11 10 25 25 H 1.08999 * 109.50480 * 299.24136 * 12 11 10 26 26 H 1.09003 * 109.52393 * 62.24889 * 13 12 11 27 27 H 1.08998 * 109.52208 * 182.44010 * 13 12 11 28 28 H 1.09001 * 109.47029 * 185.20441 * 16 14 13 29 29 H 1.09003 * 109.47157 * 305.19670 * 16 14 13 30 30 H 1.00900 * 110.99853 * 180.02562 * 17 16 14 31 31 H 1.00892 * 110.99546 * 303.95173 * 17 16 14 32 32 H 1.09002 * 109.46481 * 305.85957 * 18 10 9 33 33 H 1.08994 * 109.46283 * 65.83811 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 3.6463 -3.2627 1.2500 12 6 4.0420 -4.7381 1.1561 13 6 5.5490 -4.8423 0.9056 14 6 5.8990 -4.0812 -0.3761 15 1 5.3892 -4.5405 -1.2230 16 6 7.4115 -4.1299 -0.6019 17 7 7.8247 -5.5170 -0.8537 18 6 5.4497 -2.6249 -0.2377 19 1 -0.4850 0.8400 0.0004 20 1 3.8745 -0.6806 0.8905 21 1 3.8752 -0.6795 -0.8895 22 1 4.1751 -2.7971 2.0815 23 1 2.5715 -3.1848 1.4140 24 1 3.7926 -5.2420 2.0899 25 1 3.5030 -5.2078 0.3332 26 1 6.0890 -4.4074 1.7467 27 1 5.8282 -5.8901 0.7948 28 1 7.6706 -3.5118 -1.4615 29 1 7.9234 -3.7534 0.2837 30 1 8.8204 -5.5757 -1.0056 31 1 7.5380 -6.1222 -0.0991 32 1 5.6848 -2.0836 -1.1541 33 1 5.9702 -2.1624 0.6009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044531445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:49 Heat of formation + Delta-G solvation = -34.514945 kcal Electronic energy + Delta-G solvation = -13046.406949 eV Core-core repulsion = 10912.134962 eV Total energy + Delta-G solvation = -2134.271987 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.11571 -36.58365 -34.79860 -33.40294 -31.51055 -29.44577 -26.08687 -24.81724 -23.35761 -21.74537 -20.54398 -18.94617 -17.18433 -16.50549 -16.17911 -16.09921 -15.55570 -15.05166 -14.83880 -14.44333 -14.34939 -13.80733 -13.56302 -13.05507 -12.83599 -12.52549 -12.38289 -12.04161 -11.87822 -11.64215 -11.56437 -11.07589 -11.07142 -10.79066 -9.55473 -9.01086 -8.29934 -6.33588 1.33055 1.34474 1.45301 2.32858 3.02454 3.15537 3.74826 3.85309 3.94346 4.05905 4.32596 4.49144 4.52473 4.56933 4.66630 4.73893 4.74853 4.79917 4.98555 5.03015 5.11158 5.19289 5.26714 5.38309 5.50125 5.55641 6.00025 6.28131 6.39604 6.66796 6.67776 6.72791 7.30124 8.86757 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.056553 B = 0.008559 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.993409 B = 3270.547834 C = 3599.809970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.518 4.518 8 H 0.037 0.963 9 C 0.172 3.828 10 N -0.546 5.546 11 C 0.064 3.936 12 C -0.110 4.110 13 C -0.106 4.106 14 C -0.077 4.077 15 H 0.067 0.933 16 C 0.075 3.925 17 N -0.856 5.856 18 C 0.058 3.942 19 H 0.267 0.733 20 H -0.015 1.015 21 H 0.028 0.972 22 H 0.020 0.980 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.351 0.649 31 H 0.346 0.654 32 H 0.067 0.933 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.447 -7.610 2.186 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.556 4.556 8 H 0.055 0.945 9 C 0.044 3.956 10 N -0.270 5.270 11 C -0.064 4.064 12 C -0.148 4.148 13 C -0.144 4.144 14 C -0.096 4.096 15 H 0.085 0.915 16 C -0.056 4.056 17 N -0.388 5.388 18 C -0.070 4.070 19 H 0.076 0.924 20 H 0.003 0.997 21 H 0.046 0.954 22 H 0.039 0.961 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.086 0.914 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 15.603 -7.701 1.164 17.439 hybrid contribution 0.459 1.493 1.433 2.119 sum 16.062 -6.208 2.597 17.415 Atomic orbital electron populations 1.70049 1.08100 1.28162 1.52512 1.25862 0.95645 1.03176 0.94297 0.85693 0.79232 0.78541 0.79334 1.18869 1.20495 1.17718 1.21265 0.91077 0.93286 1.50005 0.94501 1.19920 0.94309 0.86551 0.94784 1.61726 1.13115 1.16616 1.35537 1.21952 0.99873 0.95170 0.89422 1.21562 0.96988 0.94172 1.02050 1.21592 0.95111 1.00935 0.96735 1.21117 0.95687 0.94037 0.98789 0.91451 1.21643 0.93577 0.90535 0.99851 1.58673 1.21292 1.07916 1.50901 1.22134 0.87392 0.97500 0.99997 0.92362 0.99719 0.95438 0.96142 0.93221 0.90102 0.92448 0.91965 0.89747 0.91152 0.94766 0.83560 0.84008 0.91420 0.95518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 2 C 0.01 0.44 5.47 84.65 0.46 0.91 16 3 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.25 -11.26 6.54 99.48 0.65 -10.60 16 7 C -0.52 -30.95 8.98 25.60 0.23 -30.72 16 8 H 0.04 2.46 7.36 -2.91 -0.02 2.43 16 9 C 0.17 8.57 3.79 85.56 0.32 8.89 16 10 N -0.55 -23.59 4.65 -900.96 -4.19 -27.77 16 11 C 0.06 2.55 5.29 86.33 0.46 3.00 16 12 C -0.11 -3.33 6.09 30.65 0.19 -3.14 16 13 C -0.11 -2.58 5.00 30.68 0.15 -2.43 16 14 C -0.08 -2.09 2.56 -10.74 -0.03 -2.12 16 15 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 16 C 0.08 1.58 6.25 86.30 0.54 2.12 16 17 N -0.86 -15.20 9.62 -186.70 -1.80 -16.99 16 18 C 0.06 1.97 4.74 86.32 0.41 2.38 16 19 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 20 H -0.01 -0.74 7.18 -2.39 -0.02 -0.76 16 21 H 0.03 1.35 7.41 -2.39 -0.02 1.33 16 22 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.05 2.32 6.70 -2.38 -0.02 2.30 16 24 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.66 6.80 -2.39 -0.02 1.64 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.35 4.70 9.08 -89.69 -0.81 3.88 16 31 H 0.35 5.35 7.31 -89.70 -0.66 4.69 16 32 H 0.07 2.25 8.02 -2.39 -0.02 2.23 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -67.64 257.94 -1.50 -69.14 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -0.44 Total: 9.94 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 2.74 Total: -21.11 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.68 Total: -104.72 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -67.64 -1.50 -69.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044531445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.624 kcal (2) G-P(sol) polarization free energy of solvation -67.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds