Wall clock time and date at job start Mon Mar 30 2020 02:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46709 * 299.99772 * 3 2 1 6 6 H 1.48502 * 109.47289 * 59.99524 * 3 2 1 7 7 C 1.37885 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00096 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.46941 * 179.97438 * 9 7 2 11 11 C 1.46846 * 111.00339 * 293.95270 * 10 9 7 12 12 C 1.53043 * 109.52323 * 185.83770 * 11 10 9 13 13 C 1.53117 * 109.27826 * 300.82306 * 12 11 10 14 14 C 1.53125 * 109.16220 * 57.65360 * 13 12 11 15 15 H 1.09008 * 109.49785 * 62.32652 * 14 13 12 16 16 C 1.52993 * 109.50126 * 182.40210 * 14 13 12 17 17 N 1.46906 * 109.47378 * 294.92122 * 16 14 13 18 18 C 1.46850 * 110.99343 * 58.20546 * 10 9 7 19 19 H 0.96994 * 120.00577 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47290 * 59.99719 * 9 7 2 21 21 H 1.08996 * 109.46765 * 299.99730 * 9 7 2 22 22 H 1.09006 * 109.45995 * 65.82459 * 11 10 9 23 23 H 1.08994 * 109.46084 * 305.85440 * 11 10 9 24 24 H 1.08997 * 109.50280 * 180.87764 * 12 11 10 25 25 H 1.09004 * 109.53004 * 60.78419 * 12 11 10 26 26 H 1.08997 * 109.52233 * 297.74551 * 13 12 11 27 27 H 1.08996 * 109.57401 * 177.58952 * 13 12 11 28 28 H 1.09004 * 109.46862 * 174.92225 * 16 14 13 29 29 H 1.09000 * 109.47250 * 54.92248 * 16 14 13 30 30 H 1.00904 * 110.99860 * 56.05050 * 17 16 14 31 31 H 1.00902 * 110.99567 * 179.97438 * 17 16 14 32 32 H 1.09005 * 109.49662 * 54.16425 * 18 10 9 33 33 H 1.08996 * 109.43126 * 294.18943 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9707 -3.6541 -1.2523 12 6 3.8471 -4.9085 -1.2782 13 6 4.7979 -4.8857 -0.0782 14 6 3.9773 -4.7969 1.2116 15 1 3.3480 -5.6821 1.3042 16 6 4.9212 -4.7133 2.4127 17 7 5.6833 -5.9642 2.5247 18 6 3.0966 -3.5462 1.1658 19 1 -0.4851 0.8399 -0.0004 20 1 0.6247 -2.5572 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 3.6024 -2.7683 -1.3193 23 1 2.2827 -3.6742 -2.0974 24 1 4.4264 -4.9286 -2.2012 25 1 3.2156 -5.7954 -1.2255 26 1 5.4562 -4.0202 -0.1515 27 1 5.3949 -5.7976 -0.0680 28 1 4.3397 -4.5595 3.3218 29 1 5.6098 -3.8794 2.2764 30 1 6.1806 -6.1624 1.6694 31 1 6.3148 -5.9337 3.3110 32 1 2.5004 -3.4884 2.0766 33 1 3.7271 -2.6606 1.0878 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044531447.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:51 Heat of formation + Delta-G solvation = -16.422553 kcal Electronic energy + Delta-G solvation = -13183.836498 eV Core-core repulsion = 11050.349056 eV Total energy + Delta-G solvation = -2133.487442 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.57530 -35.13278 -33.01089 -31.51535 -30.05527 -26.68680 -24.59086 -23.66493 -21.71173 -20.28757 -19.07681 -16.37518 -15.92348 -15.04549 -14.78161 -14.30502 -13.82352 -13.45493 -13.28099 -13.03164 -12.39858 -12.13051 -11.63486 -11.20035 -11.05929 -10.92935 -10.51987 -10.39366 -10.33550 -10.02705 -9.76195 -9.68901 -9.38356 -8.62242 -8.43034 -7.11545 -6.01869 -4.11276 3.25297 3.33398 3.36523 4.40110 4.62552 5.04816 5.15978 5.27643 5.30881 5.43186 5.68572 5.79871 5.97680 5.99188 6.15867 6.19826 6.31543 6.41643 6.51975 6.60752 6.78902 6.82940 6.95962 7.20770 7.33019 7.46719 7.54277 7.91277 8.11271 8.31757 8.37156 9.00018 9.55456 11.02867 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042296 B = 0.009440 C = 0.008784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.838381 B = 2965.388112 C = 3186.867167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.186 3.814 10 N -0.541 5.541 11 C 0.063 3.937 12 C -0.116 4.116 13 C -0.112 4.112 14 C -0.085 4.085 15 H 0.080 0.920 16 C 0.066 3.934 17 N -0.851 5.851 18 C 0.072 3.928 19 H 0.262 0.738 20 H 0.030 0.970 21 H 0.031 0.969 22 H 0.034 0.966 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.024 0.976 30 H 0.337 0.663 31 H 0.335 0.665 32 H 0.064 0.936 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.636 -7.952 1.320 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.061 3.939 10 N -0.265 5.265 11 C -0.066 4.066 12 C -0.154 4.154 13 C -0.150 4.150 14 C -0.105 4.105 15 H 0.098 0.902 16 C -0.065 4.065 17 N -0.381 5.381 18 C -0.057 4.057 19 H 0.071 0.929 20 H 0.048 0.952 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.082 0.918 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.479 -8.608 1.456 12.170 hybrid contribution 1.728 2.510 -0.210 3.054 sum 10.207 -6.098 1.246 11.955 Atomic orbital electron populations 1.69951 1.05993 1.26685 1.50342 1.24972 0.94763 0.99115 0.95012 0.86606 0.80078 0.84050 0.77685 1.19944 1.20923 1.20926 1.21810 0.93341 0.92158 1.51380 0.92519 1.19748 0.90821 0.85456 0.97907 1.62381 1.17041 1.46307 1.00749 1.21855 0.95759 0.95427 0.93527 1.21601 0.97510 0.99473 0.96770 1.21588 0.97682 1.00329 0.95400 1.21264 0.96154 1.00222 0.92832 0.90183 1.21817 0.95918 0.89469 0.99297 1.58784 1.33610 1.36909 1.08762 1.21809 0.94485 0.94645 0.94764 0.92870 0.95175 0.95073 0.94777 0.91895 0.92709 0.91779 0.92971 0.92769 0.91037 0.95804 0.84964 0.85310 0.91792 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.55 -15.24 7.74 -34.44 -0.27 -15.50 16 8 H 0.06 1.57 5.84 -52.49 -0.31 1.26 16 9 C 0.19 4.90 5.13 -4.98 -0.03 4.88 16 10 N -0.54 -11.94 4.86 -236.11 -1.15 -13.08 16 11 C 0.06 1.26 5.14 -3.83 -0.02 1.24 16 12 C -0.12 -1.84 6.09 -26.65 -0.16 -2.00 16 13 C -0.11 -1.66 5.00 -26.61 -0.13 -1.79 16 14 C -0.09 -1.37 2.56 -90.54 -0.23 -1.60 16 15 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 16 C 0.07 0.91 6.25 -3.82 -0.02 0.89 16 17 N -0.85 -9.96 9.62 -10.37 -0.10 -10.06 16 18 C 0.07 1.44 4.30 -3.83 -0.02 1.42 16 19 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 20 H 0.03 0.85 8.06 -51.93 -0.42 0.43 16 21 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.03 0.74 7.03 -51.93 -0.37 0.37 16 23 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.69 6.80 -51.93 -0.35 0.33 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.34 3.61 7.31 -39.29 -0.29 3.32 16 31 H 0.34 3.22 9.08 -39.29 -0.36 2.86 16 32 H 0.06 1.31 8.12 -51.93 -0.42 0.89 16 33 H 0.04 0.78 6.57 -51.93 -0.34 0.44 16 LS Contribution 258.46 15.07 3.89 3.89 Total: -1.00 -29.31 258.46 -7.97 -37.28 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.36 Total: 1.90 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -0.98 Total: -10.76 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.51 Total: -48.87 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.31 -7.97 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044531447.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.862 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds