Wall clock time and date at job start Mon Mar 30 2020 02:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46709 * 299.99772 * 3 2 1 6 6 H 1.48502 * 109.47289 * 59.99524 * 3 2 1 7 7 C 1.37885 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00096 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.46941 * 179.97438 * 9 7 2 11 11 C 1.46846 * 111.00339 * 293.95270 * 10 9 7 12 12 C 1.53043 * 109.52323 * 185.83770 * 11 10 9 13 13 C 1.53117 * 109.27826 * 300.82306 * 12 11 10 14 14 C 1.53125 * 109.16220 * 57.65360 * 13 12 11 15 15 H 1.09008 * 109.49785 * 62.32652 * 14 13 12 16 16 C 1.52993 * 109.50126 * 182.40210 * 14 13 12 17 17 N 1.46906 * 109.47378 * 294.92122 * 16 14 13 18 18 C 1.46850 * 110.99343 * 58.20546 * 10 9 7 19 19 H 0.96994 * 120.00577 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47290 * 59.99719 * 9 7 2 21 21 H 1.08996 * 109.46765 * 299.99730 * 9 7 2 22 22 H 1.09006 * 109.45995 * 65.82459 * 11 10 9 23 23 H 1.08994 * 109.46084 * 305.85440 * 11 10 9 24 24 H 1.08997 * 109.50280 * 180.87764 * 12 11 10 25 25 H 1.09004 * 109.53004 * 60.78419 * 12 11 10 26 26 H 1.08997 * 109.52233 * 297.74551 * 13 12 11 27 27 H 1.08996 * 109.57401 * 177.58952 * 13 12 11 28 28 H 1.09004 * 109.46862 * 174.92225 * 16 14 13 29 29 H 1.09000 * 109.47250 * 54.92248 * 16 14 13 30 30 H 1.00904 * 110.99860 * 56.05050 * 17 16 14 31 31 H 1.00902 * 110.99567 * 179.97438 * 17 16 14 32 32 H 1.09005 * 109.49662 * 54.16425 * 18 10 9 33 33 H 1.08996 * 109.43126 * 294.18943 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9707 -3.6541 -1.2523 12 6 3.8471 -4.9085 -1.2782 13 6 4.7979 -4.8857 -0.0782 14 6 3.9773 -4.7969 1.2116 15 1 3.3480 -5.6821 1.3042 16 6 4.9212 -4.7133 2.4127 17 7 5.6833 -5.9642 2.5247 18 6 3.0966 -3.5462 1.1658 19 1 -0.4851 0.8399 -0.0004 20 1 0.6247 -2.5572 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 3.6024 -2.7683 -1.3193 23 1 2.2827 -3.6742 -2.0974 24 1 4.4264 -4.9286 -2.2012 25 1 3.2156 -5.7954 -1.2255 26 1 5.4562 -4.0202 -0.1515 27 1 5.3949 -5.7976 -0.0680 28 1 4.3397 -4.5595 3.3218 29 1 5.6098 -3.8794 2.2764 30 1 6.1806 -6.1624 1.6694 31 1 6.3148 -5.9337 3.3110 32 1 2.5004 -3.4884 2.0766 33 1 3.7271 -2.6606 1.0878 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044531447.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:50 Heat of formation + Delta-G solvation = -38.378792 kcal Electronic energy + Delta-G solvation = -13184.788592 eV Core-core repulsion = 11050.349056 eV Total energy + Delta-G solvation = -2134.439536 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.09888 -36.58563 -34.83316 -33.20697 -31.39904 -28.69455 -26.01218 -25.40587 -23.30072 -21.83619 -20.58685 -18.49103 -17.16631 -16.64335 -16.27894 -15.92495 -15.22548 -15.13032 -14.74119 -14.53214 -14.04888 -13.62721 -13.29798 -12.97386 -12.85485 -12.59183 -12.27091 -12.16988 -11.95548 -11.78628 -11.50191 -11.13528 -10.97824 -10.63994 -9.57436 -9.01883 -8.17501 -6.38565 1.33500 1.34200 1.46201 2.34377 3.06084 3.28749 3.79352 3.89111 3.98311 4.12164 4.40846 4.55047 4.56264 4.66728 4.74004 4.83887 4.94764 5.00024 5.07113 5.16873 5.27111 5.30256 5.32944 5.39797 5.55794 5.71848 6.03841 6.23010 6.28862 6.57114 6.67294 6.83466 7.33211 8.84672 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042296 B = 0.009440 C = 0.008784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.838381 B = 2965.388112 C = 3186.867167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.556 4.556 8 H 0.056 0.944 9 C 0.198 3.802 10 N -0.543 5.543 11 C 0.061 3.939 12 C -0.107 4.107 13 C -0.108 4.108 14 C -0.075 4.075 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.850 5.850 18 C 0.075 3.925 19 H 0.266 0.734 20 H 0.004 0.996 21 H 0.003 0.997 22 H 0.015 0.985 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.026 0.974 30 H 0.346 0.654 31 H 0.350 0.650 32 H 0.049 0.951 33 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.853 -8.496 1.288 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.595 4.595 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.267 5.267 11 C -0.067 4.067 12 C -0.145 4.145 13 C -0.146 4.146 14 C -0.095 4.095 15 H 0.092 0.908 16 C -0.058 4.058 17 N -0.382 5.382 18 C -0.054 4.054 19 H 0.075 0.925 20 H 0.022 0.978 21 H 0.021 0.979 22 H 0.033 0.967 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.067 0.933 33 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.721 -9.175 1.427 14.183 hybrid contribution 1.002 2.633 -0.198 2.824 sum 11.723 -6.542 1.229 13.481 Atomic orbital electron populations 1.70073 1.07629 1.27900 1.51086 1.25863 0.95654 1.02979 0.94479 0.85485 0.78847 0.79245 0.77981 1.19187 1.20169 1.20197 1.22003 0.93323 0.92960 1.51238 0.92622 1.19414 0.91295 0.86959 0.95181 1.62332 1.17709 1.43989 1.02647 1.21940 0.95629 0.97130 0.91995 1.21563 0.97252 0.96896 0.98779 1.21586 0.97344 1.01923 0.93701 1.21137 0.96025 0.97274 0.95030 0.90841 1.21629 0.95686 0.90638 0.97836 1.58700 1.34238 1.35344 1.09941 1.21826 0.94109 0.96284 0.93182 0.92523 0.97817 0.97903 0.96686 0.92836 0.89977 0.91329 0.93089 0.89454 0.91549 0.95598 0.83975 0.83650 0.93251 0.96456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 2 C 0.01 0.55 5.46 84.66 0.46 1.01 16 3 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.56 -31.69 7.74 25.60 0.20 -31.49 16 8 H 0.06 3.13 5.84 -2.91 -0.02 3.11 16 9 C 0.20 10.90 5.13 85.56 0.44 11.34 16 10 N -0.54 -24.51 4.86 -900.93 -4.37 -28.88 16 11 C 0.06 2.45 5.14 86.33 0.44 2.89 16 12 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 13 C -0.11 -2.87 5.00 30.68 0.15 -2.72 16 14 C -0.08 -2.30 2.56 -10.74 -0.03 -2.33 16 15 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 16 C 0.07 1.88 6.25 86.30 0.54 2.41 16 17 N -0.85 -17.22 9.62 -186.71 -1.80 -19.01 16 18 C 0.08 3.02 4.30 86.33 0.37 3.39 16 19 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 20 H 0.00 0.22 8.06 -2.39 -0.02 0.20 16 21 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 22 H 0.01 0.65 7.03 -2.38 -0.02 0.63 16 23 H 0.05 2.18 8.06 -2.39 -0.02 2.16 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.81 6.80 -2.39 -0.02 1.80 16 28 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.35 6.05 7.31 -89.69 -0.66 5.39 16 31 H 0.35 5.60 9.08 -89.69 -0.81 4.79 16 32 H 0.05 2.08 8.12 -2.38 -0.02 2.06 16 33 H 0.02 0.76 6.57 -2.39 -0.02 0.74 16 Total: -1.00 -63.68 258.46 -1.47 -65.16 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -0.38 Total: 10.64 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 2.77 Total: -18.44 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -5.89 Total: -103.86 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -63.68 -1.47 -65.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044531447.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.779 kcal (2) G-P(sol) polarization free energy of solvation -63.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds