Wall clock time and date at job start Mon Mar 30 2020 02:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99687 * 2 1 4 4 H 1.48499 * 109.47402 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47433 * 120.00274 * 3 2 1 6 6 H 1.48505 * 109.47255 * 240.00354 * 3 2 1 7 7 C 1.37878 * 119.99785 * 180.27886 * 2 1 3 8 8 H 1.08002 * 119.99438 * 179.72352 * 7 2 1 9 9 C 1.50699 * 120.00341 * 359.72358 * 7 2 1 10 10 N 1.46894 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46850 * 110.99776 * 295.48761 * 10 9 7 12 12 C 1.53034 * 109.52524 * 174.16365 * 11 10 9 13 13 C 1.53121 * 109.28065 * 59.17908 * 12 11 10 14 14 C 1.53122 * 109.15987 * 302.35222 * 13 12 11 15 15 C 1.46847 * 110.99883 * 171.28366 * 10 9 7 16 16 H 1.08995 * 109.46549 * 65.81854 * 15 10 9 17 17 C 1.52994 * 109.46211 * 305.84790 * 15 10 9 18 18 N 1.46905 * 109.47178 * 306.14661 * 17 15 10 19 19 H 0.97007 * 119.99809 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46670 * 300.00091 * 9 7 2 21 21 H 1.08999 * 109.47290 * 59.99730 * 9 7 2 22 22 H 1.09001 * 109.46380 * 294.18034 * 11 10 9 23 23 H 1.08995 * 109.46301 * 54.14876 * 11 10 9 24 24 H 1.08998 * 109.50575 * 299.24170 * 12 11 10 25 25 H 1.08993 * 109.53899 * 179.13849 * 12 11 10 26 26 H 1.08998 * 109.52763 * 182.44363 * 13 12 11 27 27 H 1.09004 * 109.52124 * 62.24854 * 13 12 11 28 28 H 1.09003 * 109.49835 * 297.70454 * 14 13 12 29 29 H 1.09000 * 109.50131 * 177.59609 * 14 13 12 30 30 H 1.09003 * 109.46896 * 66.14483 * 17 15 10 31 31 H 1.08999 * 109.47523 * 186.14463 * 17 15 10 32 32 H 1.00901 * 110.99837 * 179.82288 * 18 17 15 33 33 H 1.00897 * 110.99501 * 303.77636 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6965 1.2124 6 1 3.1028 1.6965 -1.2126 7 6 2.0045 -1.1941 -0.0058 8 1 3.0845 -1.1940 -0.0103 9 6 1.2511 -2.4992 -0.0059 10 7 2.2057 -3.6156 -0.0120 11 6 2.9913 -3.6294 -1.2526 12 6 4.0700 -4.7113 -1.1629 13 6 3.4039 -6.0724 -0.9435 14 6 2.5532 -6.0164 0.3285 15 6 1.5185 -4.8967 0.1955 16 1 0.8684 -5.1021 -0.6549 17 6 0.6792 -4.8240 1.4726 18 7 1.5295 -4.4025 2.5940 19 1 -0.4850 -0.8401 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 2.3343 -3.8407 -2.0962 23 1 3.4631 -2.6571 -1.3945 24 1 4.7357 -4.4931 -0.3278 25 1 4.6434 -4.7320 -2.0895 26 1 4.1703 -6.8399 -0.8356 27 1 2.7680 -6.3085 -1.7968 28 1 3.1950 -5.8188 1.1870 29 1 2.0425 -6.9694 0.4669 30 1 -0.1270 -4.1030 1.3370 31 1 0.2566 -5.8057 1.6862 32 1 0.9973 -4.3440 3.4493 33 1 2.3194 -5.0210 2.7012 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044559258.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:45 Heat of formation + Delta-G solvation = -7.786129 kcal Electronic energy + Delta-G solvation = -13447.668920 eV Core-core repulsion = 11314.555982 eV Total energy + Delta-G solvation = -2133.112938 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.72330 -34.10791 -33.72518 -31.66286 -29.72899 -26.45899 -24.75616 -23.60116 -21.45035 -20.55981 -18.78724 -16.62105 -15.71872 -15.27759 -14.50335 -14.03125 -13.64154 -13.54000 -13.13463 -12.90986 -12.57186 -11.97975 -11.53372 -11.37466 -11.09563 -10.75594 -10.59440 -10.56551 -10.32704 -10.00798 -9.89170 -9.42123 -8.48496 -8.21209 -8.01681 -7.05901 -6.22620 -3.88234 3.51517 3.55122 3.72801 4.61906 4.81395 5.11671 5.16658 5.21203 5.33305 5.53104 5.63132 5.74878 5.82592 5.87754 6.02023 6.07766 6.25672 6.27627 6.37211 6.43598 6.55793 6.78209 6.82472 7.20609 7.34530 7.64192 7.96135 8.03797 8.25370 8.53400 8.76084 9.03877 9.80805 11.16586 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039856 B = 0.011158 C = 0.009601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.352153 B = 2508.901161 C = 2915.732162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 1.071 2.929 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.576 4.576 8 H 0.054 0.946 9 C 0.185 3.815 10 N -0.503 5.503 11 C 0.062 3.938 12 C -0.116 4.116 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.082 3.918 16 H 0.026 0.974 17 C 0.073 3.927 18 N -0.821 5.821 19 H 0.265 0.735 20 H 0.036 0.964 21 H -0.033 1.033 22 H 0.012 0.988 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.014 0.986 32 H 0.329 0.671 33 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -11.358 0.641 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.192 4.192 3 Si 0.900 3.100 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.614 4.614 8 H 0.072 0.928 9 C 0.060 3.940 10 N -0.228 5.228 11 C -0.066 4.066 12 C -0.154 4.154 13 C -0.154 4.154 14 C -0.149 4.149 15 C -0.028 4.028 16 H 0.044 0.956 17 C -0.058 4.058 18 N -0.351 5.351 19 H 0.075 0.925 20 H 0.054 0.946 21 H -0.015 1.015 22 H 0.030 0.970 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.141 0.859 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.691 -8.962 0.607 10.133 hybrid contribution -0.691 -2.783 -0.318 2.885 sum 4.001 -11.744 0.289 12.410 Atomic orbital electron populations 1.70792 1.06866 1.30159 1.47903 1.25776 0.96535 1.02534 0.94331 0.83515 0.74773 0.75331 0.76406 1.21032 1.21462 1.21688 1.21963 0.94626 0.91097 1.53759 0.92771 1.19833 0.90887 0.88763 0.94564 1.61869 1.26179 1.01068 1.33634 1.21976 0.94908 0.99127 0.90598 1.21615 0.98287 0.94494 1.01024 1.21538 0.98686 0.97552 0.97667 1.21611 0.97874 0.96848 0.98532 1.21606 0.93836 0.91911 0.95423 0.95626 1.21806 0.95552 0.96862 0.91618 1.58382 1.11784 1.58515 1.06401 0.92533 0.94647 1.01519 0.96993 0.89820 0.91443 0.92653 0.92674 0.92888 0.91196 0.92964 0.90896 0.96800 0.85888 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.86 13.65 55.43 0.76 -28.10 16 2 C 0.01 0.32 5.46 -17.82 -0.10 0.22 16 3 Si 1.07 26.24 29.90 -169.99 -5.08 21.15 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.58 -16.90 8.42 -34.44 -0.29 -17.19 16 8 H 0.05 1.60 7.03 -52.49 -0.37 1.23 16 9 C 0.18 4.95 3.73 -4.98 -0.02 4.93 16 10 N -0.50 -11.19 4.19 -228.14 -0.96 -12.15 16 11 C 0.06 1.29 5.29 -3.83 -0.02 1.27 16 12 C -0.12 -1.90 6.09 -26.65 -0.16 -2.06 16 13 C -0.12 -1.68 6.00 -26.61 -0.16 -1.84 16 14 C -0.11 -1.66 5.18 -26.65 -0.14 -1.80 16 15 C 0.08 1.52 2.21 -67.73 -0.15 1.37 16 16 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 17 C 0.07 1.27 5.72 -3.82 -0.02 1.25 16 18 N -0.82 -13.97 9.27 -10.37 -0.10 -14.07 16 19 H 0.26 8.30 7.22 -40.82 -0.29 8.00 16 20 H 0.04 1.00 5.69 -51.93 -0.30 0.70 16 21 H -0.03 -0.94 8.00 -51.93 -0.42 -1.36 16 22 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.08 1.90 6.60 -51.93 -0.34 1.56 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.06 6.68 -51.93 -0.35 0.71 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.44 6.51 -51.93 -0.34 1.10 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.33 4.87 9.08 -39.29 -0.36 4.51 16 33 H 0.33 5.07 7.29 -39.29 -0.29 4.78 16 LS Contribution 255.68 15.07 3.85 3.85 Total: -1.00 -31.83 255.68 -7.81 -39.64 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.22 Total: 3.52 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.06 Total: -13.84 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.30 Total: -54.31 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -5.08 Total: 21.15 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.83 -7.81 -39.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044559258.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.849 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds