Wall clock time and date at job start Mon Mar 30 2020 02:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99687 * 2 1 4 4 H 1.48499 * 109.47402 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47433 * 120.00274 * 3 2 1 6 6 H 1.48505 * 109.47255 * 240.00354 * 3 2 1 7 7 C 1.37878 * 119.99785 * 180.27886 * 2 1 3 8 8 H 1.08002 * 119.99438 * 179.72352 * 7 2 1 9 9 C 1.50699 * 120.00341 * 359.72358 * 7 2 1 10 10 N 1.46894 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46850 * 110.99776 * 295.48761 * 10 9 7 12 12 C 1.53034 * 109.52524 * 174.16365 * 11 10 9 13 13 C 1.53121 * 109.28065 * 59.17908 * 12 11 10 14 14 C 1.53122 * 109.15987 * 302.35222 * 13 12 11 15 15 C 1.46847 * 110.99883 * 171.28366 * 10 9 7 16 16 H 1.08995 * 109.46549 * 65.81854 * 15 10 9 17 17 C 1.52994 * 109.46211 * 305.84790 * 15 10 9 18 18 N 1.46905 * 109.47178 * 306.14661 * 17 15 10 19 19 H 0.97007 * 119.99809 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46670 * 300.00091 * 9 7 2 21 21 H 1.08999 * 109.47290 * 59.99730 * 9 7 2 22 22 H 1.09001 * 109.46380 * 294.18034 * 11 10 9 23 23 H 1.08995 * 109.46301 * 54.14876 * 11 10 9 24 24 H 1.08998 * 109.50575 * 299.24170 * 12 11 10 25 25 H 1.08993 * 109.53899 * 179.13849 * 12 11 10 26 26 H 1.08998 * 109.52763 * 182.44363 * 13 12 11 27 27 H 1.09004 * 109.52124 * 62.24854 * 13 12 11 28 28 H 1.09003 * 109.49835 * 297.70454 * 14 13 12 29 29 H 1.09000 * 109.50131 * 177.59609 * 14 13 12 30 30 H 1.09003 * 109.46896 * 66.14483 * 17 15 10 31 31 H 1.08999 * 109.47523 * 186.14463 * 17 15 10 32 32 H 1.00901 * 110.99837 * 179.82288 * 18 17 15 33 33 H 1.00897 * 110.99501 * 303.77636 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6965 1.2124 6 1 3.1028 1.6965 -1.2126 7 6 2.0045 -1.1941 -0.0058 8 1 3.0845 -1.1940 -0.0103 9 6 1.2511 -2.4992 -0.0059 10 7 2.2057 -3.6156 -0.0120 11 6 2.9913 -3.6294 -1.2526 12 6 4.0700 -4.7113 -1.1629 13 6 3.4039 -6.0724 -0.9435 14 6 2.5532 -6.0164 0.3285 15 6 1.5185 -4.8967 0.1955 16 1 0.8684 -5.1021 -0.6549 17 6 0.6792 -4.8240 1.4726 18 7 1.5295 -4.4025 2.5940 19 1 -0.4850 -0.8401 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 2.3343 -3.8407 -2.0962 23 1 3.4631 -2.6571 -1.3945 24 1 4.7357 -4.4931 -0.3278 25 1 4.6434 -4.7320 -2.0895 26 1 4.1703 -6.8399 -0.8356 27 1 2.7680 -6.3085 -1.7968 28 1 3.1950 -5.8188 1.1870 29 1 2.0425 -6.9694 0.4669 30 1 -0.1270 -4.1030 1.3370 31 1 0.2566 -5.8057 1.6862 32 1 0.9973 -4.3440 3.4493 33 1 2.3194 -5.0210 2.7012 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044559258.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:44 Heat of formation + Delta-G solvation = -31.918403 kcal Electronic energy + Delta-G solvation = -13448.715374 eV Core-core repulsion = 11314.555982 eV Total energy + Delta-G solvation = -2134.159392 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.26619 -35.73436 -35.49146 -33.53105 -31.13652 -28.44680 -26.26871 -25.44321 -23.27780 -21.98413 -20.27201 -18.83576 -17.17905 -16.82736 -16.14143 -15.57943 -15.38638 -15.18582 -14.69360 -14.48455 -14.07349 -13.55887 -13.28951 -13.19782 -12.77035 -12.60644 -12.42355 -12.03328 -11.91876 -11.60642 -11.36902 -10.96096 -10.63929 -10.47963 -9.33758 -8.92162 -8.61948 -6.29985 1.52661 1.62395 1.81381 2.58704 3.17323 3.22864 3.81711 3.85350 3.90191 4.02581 4.26321 4.37978 4.42130 4.49853 4.63249 4.75606 4.82158 4.94807 5.00389 5.05105 5.12781 5.20488 5.23754 5.34928 5.49912 5.89670 6.10546 6.35033 6.51444 6.56937 6.78151 6.81440 7.49186 8.75971 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039856 B = 0.011158 C = 0.009601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.352153 B = 2508.901161 C = 2915.732162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.042 4.042 3 Si 1.120 2.880 4 H -0.284 1.284 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.588 4.588 8 H 0.049 0.951 9 C 0.200 3.800 10 N -0.507 5.507 11 C 0.059 3.941 12 C -0.107 4.107 13 C -0.114 4.114 14 C -0.103 4.103 15 C 0.074 3.926 16 H 0.014 0.986 17 C 0.077 3.923 18 N -0.839 5.839 19 H 0.250 0.750 20 H 0.019 0.981 21 H -0.067 1.067 22 H 0.001 0.999 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.341 0.659 33 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 -12.745 0.946 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.238 4.238 3 Si 0.942 3.058 4 H -0.209 1.209 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.626 4.626 8 H 0.067 0.933 9 C 0.073 3.927 10 N -0.231 5.231 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.151 4.151 14 C -0.140 4.140 15 C -0.035 4.035 16 H 0.032 0.968 17 C -0.054 4.054 18 N -0.372 5.372 19 H 0.059 0.941 20 H 0.037 0.963 21 H -0.050 1.050 22 H 0.019 0.981 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.432 -10.396 0.916 12.259 hybrid contribution -1.254 -2.407 -0.420 2.746 sum 5.178 -12.802 0.496 13.819 Atomic orbital electron populations 1.70928 1.07885 1.29302 1.49869 1.27376 0.96583 1.06619 0.93212 0.82897 0.74025 0.71057 0.77870 1.20907 1.19603 1.19567 1.22282 0.94546 0.92503 1.53258 0.93258 1.19492 0.90901 0.90194 0.92099 1.61827 1.25276 1.01604 1.34395 1.22025 0.95700 0.99614 0.89601 1.21558 0.96748 0.93987 1.02206 1.21557 0.99362 0.96916 0.97298 1.21590 0.97017 0.96314 0.99116 1.21838 0.94987 0.91232 0.95483 0.96806 1.21686 0.94577 0.97653 0.91510 1.58298 1.12598 1.59409 1.06883 0.94098 0.96293 1.05001 0.98099 0.92801 0.91628 0.90382 0.89228 0.92681 0.90877 0.89895 0.94409 0.93220 0.84577 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.75 13.65 21.45 0.29 -60.45 16 2 C -0.04 -2.52 5.46 84.65 0.46 -2.06 16 3 Si 1.12 52.79 29.90 68.60 2.05 54.85 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.59 -35.41 8.42 25.60 0.22 -35.19 16 8 H 0.05 2.96 7.03 -2.91 -0.02 2.94 16 9 C 0.20 11.17 3.73 85.56 0.32 11.49 16 10 N -0.51 -22.83 4.19 -875.69 -3.67 -26.50 16 11 C 0.06 2.45 5.29 86.32 0.46 2.91 16 12 C -0.11 -3.25 6.09 30.65 0.19 -3.06 16 13 C -0.11 -2.84 6.00 30.68 0.18 -2.66 16 14 C -0.10 -2.74 5.18 30.65 0.16 -2.58 16 15 C 0.07 2.68 2.21 44.94 0.10 2.78 16 16 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 17 C 0.08 2.64 5.72 86.30 0.49 3.13 16 18 N -0.84 -27.74 9.27 -186.71 -1.73 -29.47 16 19 H 0.25 16.44 7.22 -92.70 -0.67 15.77 16 20 H 0.02 1.13 5.69 -2.39 -0.01 1.11 16 21 H -0.07 -4.14 8.00 -2.39 -0.02 -4.15 16 22 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 23 H 0.05 2.51 6.60 -2.39 -0.02 2.50 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.07 1.94 6.68 -2.39 -0.02 1.92 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.54 6.51 -2.39 -0.02 1.53 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.34 9.77 9.08 -89.69 -0.81 8.95 16 33 H 0.35 9.78 7.29 -89.70 -0.65 9.12 16 Total: -1.00 -70.57 255.68 -0.76 -71.32 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -0.27 Total: 15.50 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 2.58 Total: -25.24 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -5.11 Total: -116.42 kcal Atomic # 14 Polarization: 52.79 SS G_CDS: 2.05 Total: 54.85 kcal Total: -70.57 -0.76 -71.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044559258.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.404 kcal (2) G-P(sol) polarization free energy of solvation -70.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds