Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99855 * 2 1 4 4 H 1.48501 * 109.46968 * 270.00236 * 3 2 1 5 5 H 1.48503 * 109.47126 * 29.99655 * 3 2 1 6 6 H 1.48490 * 109.47217 * 149.99918 * 3 2 1 7 7 C 1.37871 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00240 * 359.97438 * 7 2 1 9 9 C 1.50710 * 119.99679 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.46780 * 179.97438 * 9 7 2 11 11 C 1.46843 * 110.99773 * 65.81295 * 10 9 7 12 12 C 1.53036 * 109.51483 * 185.83050 * 11 10 9 13 13 C 1.53114 * 109.27800 * 300.82912 * 12 11 10 14 14 C 1.53111 * 109.16451 * 57.65047 * 13 12 11 15 15 C 1.46829 * 110.97997 * 190.02497 * 10 9 7 16 16 H 1.08999 * 109.45324 * 294.16346 * 15 10 9 17 17 C 1.52998 * 109.46589 * 54.14452 * 15 10 9 18 18 N 1.46899 * 109.47138 * 53.95357 * 17 15 10 19 19 H 0.97009 * 120.00192 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46699 * 60.00323 * 9 7 2 21 21 H 1.09001 * 109.47016 * 299.99987 * 9 7 2 22 22 H 1.08998 * 109.46657 * 65.81987 * 11 10 9 23 23 H 1.09001 * 109.46395 * 305.84079 * 11 10 9 24 24 H 1.08997 * 109.50064 * 60.76669 * 12 11 10 25 25 H 1.08995 * 109.50612 * 180.88741 * 12 11 10 26 26 H 1.09006 * 109.52302 * 177.55968 * 13 12 11 27 27 H 1.09009 * 109.52291 * 297.74461 * 13 12 11 28 28 H 1.09003 * 109.50261 * 62.28878 * 14 13 12 29 29 H 1.09002 * 109.50743 * 182.40622 * 14 13 12 30 30 H 1.08996 * 109.46892 * 173.95436 * 17 15 10 31 31 H 1.08999 * 109.47036 * 293.95117 * 17 15 10 32 32 H 1.00902 * 111.00144 * 64.95528 * 18 17 15 33 33 H 1.00905 * 111.00029 * 188.90698 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0013 11 6 3.6466 -3.2637 -1.2484 12 6 4.0424 -4.7389 -1.1531 13 6 5.5493 -4.8427 -0.9020 14 6 5.8990 -4.0805 0.3791 15 6 5.4494 -2.6244 0.2395 16 1 5.9699 -2.1624 -0.5994 17 6 5.7787 -1.8635 1.5253 18 7 4.9670 -2.3931 2.6292 19 1 -0.4851 0.8401 0.0004 20 1 3.8752 -0.6795 0.8895 21 1 3.8745 -0.6807 -0.8905 22 1 4.1757 -2.7987 -2.0801 23 1 2.5718 -3.1860 -1.4127 24 1 3.5032 -5.2079 -0.3302 25 1 3.7935 -5.2435 -2.0866 26 1 5.8286 -5.8904 -0.7903 27 1 6.0896 -4.4084 -1.7433 28 1 5.3890 -4.5393 1.2262 29 1 6.9765 -4.1148 0.5403 30 1 6.8359 -1.9871 1.7599 31 1 5.5585 -0.8049 1.3876 32 1 5.2107 -3.3514 2.8299 33 1 5.0568 -1.8170 3.4528 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044559259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = 0.170609 kcal Electronic energy + Delta-G solvation = -13456.610579 eV Core-core repulsion = 11323.842671 eV Total energy + Delta-G solvation = -2132.767908 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.71695 -34.11626 -33.48286 -31.75210 -29.74358 -27.44506 -24.88434 -23.50524 -21.13024 -20.35773 -18.74959 -16.69965 -15.64447 -15.16683 -14.81706 -14.02646 -13.98351 -13.30070 -13.19272 -12.74747 -12.60900 -12.06665 -11.92845 -11.48278 -11.22807 -10.71720 -10.62858 -10.51159 -10.31057 -10.00015 -9.66692 -9.41980 -9.03745 -8.43733 -8.03806 -7.08785 -5.92606 -3.86628 3.34735 3.41900 3.44270 4.52365 4.75877 5.10386 5.17024 5.22728 5.34001 5.40986 5.62957 5.77114 5.81166 5.88685 6.04714 6.07758 6.25617 6.30265 6.36915 6.42936 6.58245 6.80060 6.86359 7.04004 7.20672 7.61179 7.81690 7.93909 8.14811 8.31409 8.84558 9.17806 9.70685 11.21167 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038648 B = 0.012131 C = 0.010389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.320327 B = 2307.568830 C = 2694.596161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.875 3.125 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.494 4.494 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.499 5.499 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.117 4.117 14 C -0.110 4.110 15 C 0.083 3.917 16 H 0.026 0.974 17 C 0.071 3.929 18 N -0.820 5.820 19 H 0.261 0.739 20 H 0.040 0.960 21 H -0.029 1.029 22 H 0.013 0.987 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.333 0.667 33 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.694 -6.190 0.841 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.703 3.297 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.533 4.533 8 H 0.097 0.903 9 C 0.038 3.962 10 N -0.223 5.223 11 C -0.067 4.067 12 C -0.154 4.154 13 C -0.155 4.155 14 C -0.148 4.148 15 C -0.027 4.027 16 H 0.044 0.956 17 C -0.060 4.060 18 N -0.350 5.350 19 H 0.071 0.929 20 H 0.058 0.942 21 H -0.011 1.011 22 H 0.031 0.969 23 H 0.106 0.894 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.688 -6.171 0.742 13.238 hybrid contribution 1.721 1.357 -0.234 2.204 sum 13.409 -4.814 0.508 14.256 Atomic orbital electron populations 1.69902 1.06049 1.26483 1.52139 1.24881 0.94681 0.98650 0.95340 0.86870 0.80319 0.84355 0.78147 1.20680 1.21374 1.19400 1.21052 0.88944 0.94473 1.48784 0.90278 1.20193 0.96864 0.84526 0.94655 1.61768 1.09044 1.18434 1.33055 1.22013 1.02054 0.92437 0.90241 1.21606 0.95196 0.97517 1.01081 1.21545 0.97145 0.99222 0.97573 1.21592 0.98904 0.95703 0.98572 1.21607 0.91127 0.94653 0.95270 0.95634 1.21818 0.92703 0.99458 0.92068 1.58342 1.61532 1.05831 1.09262 0.92934 0.94239 1.01099 0.96901 0.89432 0.91295 0.92616 0.92703 0.92949 0.90978 0.93051 0.96613 0.91046 0.85403 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.49 -14.47 8.98 -34.44 -0.31 -14.78 16 8 H 0.08 2.53 7.36 -52.49 -0.39 2.14 16 9 C 0.16 4.11 3.51 -4.97 -0.02 4.09 16 10 N -0.50 -10.72 4.18 -228.13 -0.95 -11.67 16 11 C 0.06 1.22 5.30 -3.84 -0.02 1.20 16 12 C -0.12 -1.87 6.09 -26.65 -0.16 -2.03 16 13 C -0.12 -1.64 6.00 -26.61 -0.16 -1.80 16 14 C -0.11 -1.59 5.17 -26.65 -0.14 -1.73 16 15 C 0.08 1.47 2.21 -67.73 -0.15 1.32 16 16 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 17 C 0.07 1.16 5.69 -3.83 -0.02 1.14 16 18 N -0.82 -13.24 9.20 -10.37 -0.10 -13.33 16 19 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 20 H 0.04 1.01 4.81 -51.93 -0.25 0.76 16 21 H -0.03 -0.73 7.55 -51.93 -0.39 -1.12 16 22 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 23 H 0.09 1.98 6.70 -51.93 -0.35 1.64 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 28 H 0.07 1.07 6.89 -51.93 -0.36 0.71 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 1.30 6.48 -51.93 -0.34 0.96 16 32 H 0.33 4.70 7.62 -39.29 -0.30 4.40 16 33 H 0.33 4.68 9.08 -39.29 -0.36 4.33 16 LS Contribution 253.93 15.07 3.83 3.83 Total: -1.00 -31.57 253.93 -7.47 -39.04 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.28 Total: 3.02 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.08 Total: -10.76 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.28 Total: -52.70 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.57 -7.47 -39.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044559259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.213 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds