Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99855 * 2 1 4 4 H 1.48501 * 109.46968 * 270.00236 * 3 2 1 5 5 H 1.48503 * 109.47126 * 29.99655 * 3 2 1 6 6 H 1.48490 * 109.47217 * 149.99918 * 3 2 1 7 7 C 1.37871 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00240 * 359.97438 * 7 2 1 9 9 C 1.50710 * 119.99679 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.46780 * 179.97438 * 9 7 2 11 11 C 1.46843 * 110.99773 * 65.81295 * 10 9 7 12 12 C 1.53036 * 109.51483 * 185.83050 * 11 10 9 13 13 C 1.53114 * 109.27800 * 300.82912 * 12 11 10 14 14 C 1.53111 * 109.16451 * 57.65047 * 13 12 11 15 15 C 1.46829 * 110.97997 * 190.02497 * 10 9 7 16 16 H 1.08999 * 109.45324 * 294.16346 * 15 10 9 17 17 C 1.52998 * 109.46589 * 54.14452 * 15 10 9 18 18 N 1.46899 * 109.47138 * 53.95357 * 17 15 10 19 19 H 0.97009 * 120.00192 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46699 * 60.00323 * 9 7 2 21 21 H 1.09001 * 109.47016 * 299.99987 * 9 7 2 22 22 H 1.08998 * 109.46657 * 65.81987 * 11 10 9 23 23 H 1.09001 * 109.46395 * 305.84079 * 11 10 9 24 24 H 1.08997 * 109.50064 * 60.76669 * 12 11 10 25 25 H 1.08995 * 109.50612 * 180.88741 * 12 11 10 26 26 H 1.09006 * 109.52302 * 177.55968 * 13 12 11 27 27 H 1.09009 * 109.52291 * 297.74461 * 13 12 11 28 28 H 1.09003 * 109.50261 * 62.28878 * 14 13 12 29 29 H 1.09002 * 109.50743 * 182.40622 * 14 13 12 30 30 H 1.08996 * 109.46892 * 173.95436 * 17 15 10 31 31 H 1.08999 * 109.47036 * 293.95117 * 17 15 10 32 32 H 1.00902 * 111.00144 * 64.95528 * 18 17 15 33 33 H 1.00905 * 111.00029 * 188.90698 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0013 11 6 3.6466 -3.2637 -1.2484 12 6 4.0424 -4.7389 -1.1531 13 6 5.5493 -4.8427 -0.9020 14 6 5.8990 -4.0805 0.3791 15 6 5.4494 -2.6244 0.2395 16 1 5.9699 -2.1624 -0.5994 17 6 5.7787 -1.8635 1.5253 18 7 4.9670 -2.3931 2.6292 19 1 -0.4851 0.8401 0.0004 20 1 3.8752 -0.6795 0.8895 21 1 3.8745 -0.6807 -0.8905 22 1 4.1757 -2.7987 -2.0801 23 1 2.5718 -3.1860 -1.4127 24 1 3.5032 -5.2079 -0.3302 25 1 3.7935 -5.2435 -2.0866 26 1 5.8286 -5.8904 -0.7903 27 1 6.0896 -4.4084 -1.7433 28 1 5.3890 -4.5393 1.2262 29 1 6.9765 -4.1148 0.5403 30 1 6.8359 -1.9871 1.7599 31 1 5.5585 -0.8049 1.3876 32 1 5.2107 -3.3514 2.8299 33 1 5.0568 -1.8170 3.4528 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044559259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = -24.414246 kcal Electronic energy + Delta-G solvation = -13457.676659 eV Core-core repulsion = 11323.842671 eV Total energy + Delta-G solvation = -2133.833988 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.17307 -35.41699 -35.35254 -33.70618 -31.07518 -29.41313 -26.25954 -25.15370 -22.84898 -21.79883 -20.18484 -18.87586 -16.99917 -16.71143 -16.48651 -15.85328 -15.20502 -14.86167 -14.65793 -14.62830 -14.00876 -13.76218 -13.34893 -13.21610 -12.62732 -12.54044 -12.45343 -11.95797 -11.76179 -11.64809 -11.48029 -11.02885 -10.85956 -10.69684 -9.24067 -8.78902 -8.23654 -6.23756 1.32382 1.34720 1.45802 2.36571 3.09323 3.26690 3.89268 3.94523 3.99639 4.10017 4.33322 4.47087 4.50720 4.60468 4.71424 4.81950 4.85574 4.99875 5.07067 5.10669 5.18301 5.23666 5.31875 5.40302 5.56426 5.66906 6.11452 6.43744 6.59599 6.79889 6.84985 6.88491 7.38458 8.93651 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038648 B = 0.012131 C = 0.010389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.320327 B = 2307.568830 C = 2694.596161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.501 4.501 8 H 0.033 0.967 9 C 0.177 3.823 10 N -0.512 5.512 11 C 0.060 3.940 12 C -0.109 4.109 13 C -0.113 4.113 14 C -0.103 4.103 15 C 0.075 3.925 16 H 0.025 0.975 17 C 0.073 3.927 18 N -0.842 5.842 19 H 0.264 0.736 20 H 0.041 0.959 21 H -0.035 1.035 22 H 0.013 0.987 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.345 0.655 33 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.576 -6.380 1.087 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.050 3.950 10 N -0.236 5.236 11 C -0.069 4.069 12 C -0.147 4.147 13 C -0.150 4.150 14 C -0.141 4.141 15 C -0.034 4.034 16 H 0.043 0.957 17 C -0.058 4.058 18 N -0.374 5.374 19 H 0.073 0.927 20 H 0.059 0.941 21 H -0.017 1.017 22 H 0.031 0.969 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.159 0.841 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.594 -6.389 0.995 15.962 hybrid contribution 0.766 1.324 -0.319 1.562 sum 15.360 -5.065 0.676 16.188 Atomic orbital electron populations 1.70064 1.08038 1.27787 1.53519 1.25822 0.95589 1.02982 0.94850 0.85712 0.79444 0.78910 0.78782 1.19687 1.20645 1.17507 1.21276 0.91376 0.92878 1.48463 0.94875 1.19897 0.93867 0.87052 0.94159 1.61683 1.12230 1.16055 1.33673 1.21988 0.99551 0.95406 0.89924 1.21550 0.97276 0.94119 1.01747 1.21545 0.94819 1.01083 0.97581 1.21579 1.00745 0.93089 0.98715 1.21844 0.88174 0.97418 0.95926 0.95703 1.21761 0.94692 0.97837 0.91543 1.58291 1.62259 1.06950 1.09876 0.92676 0.94099 1.01716 0.96920 0.93647 0.92334 0.90764 0.89764 0.92227 0.91292 0.89803 0.93024 0.93263 0.84104 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 2 C 0.00 0.22 5.47 84.65 0.46 0.69 16 3 Si 0.95 46.16 27.47 68.60 1.88 48.04 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 7 C -0.50 -30.48 8.98 25.60 0.23 -30.25 16 8 H 0.03 2.25 7.36 -2.91 -0.02 2.23 16 9 C 0.18 8.97 3.51 85.56 0.30 9.27 16 10 N -0.51 -21.96 4.18 -875.68 -3.66 -25.62 16 11 C 0.06 2.43 5.30 86.33 0.46 2.89 16 12 C -0.11 -3.36 6.09 30.64 0.19 -3.18 16 13 C -0.11 -2.74 6.00 30.67 0.18 -2.56 16 14 C -0.10 -2.62 5.17 30.64 0.16 -2.46 16 15 C 0.08 2.49 2.21 44.94 0.10 2.59 16 16 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 17 C 0.07 2.20 5.69 86.30 0.49 2.69 16 18 N -0.84 -25.60 9.20 -186.73 -1.72 -27.32 16 19 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 20 H 0.04 2.07 4.81 -2.39 -0.01 2.05 16 21 H -0.03 -1.77 7.55 -2.39 -0.02 -1.79 16 22 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.04 2.19 6.70 -2.39 -0.02 2.17 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.07 1.81 6.89 -2.39 -0.02 1.80 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.69 6.48 -2.39 -0.02 1.68 16 32 H 0.34 8.92 7.62 -89.69 -0.68 8.23 16 33 H 0.34 9.04 9.08 -89.69 -0.81 8.22 16 Total: -1.00 -70.26 253.93 -1.09 -71.35 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.46 Total: 15.35 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 2.57 Total: -20.32 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -5.08 Total: -114.43 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.88 Total: 48.04 kcal Total: -70.26 -1.09 -71.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044559259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.932 kcal (2) G-P(sol) polarization free energy of solvation -70.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds