Wall clock time and date at job start Mon Mar 30 2020 02:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99887 * 2 1 4 4 H 1.48500 * 109.47240 * 240.00486 * 3 2 1 5 5 H 1.48501 * 109.47432 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47121 * 120.00567 * 3 2 1 7 7 C 1.37871 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00427 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00559 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47515 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.48534 * 110.99830 * 52.60377 * 13 12 11 15 15 C 1.54939 * 103.22817 * 159.71871 * 14 13 12 16 16 C 1.54596 * 102.92012 * 322.58829 * 15 14 13 17 17 C 1.47901 * 111.00170 * 169.99716 * 13 12 11 18 18 H 0.97008 * 120.00114 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.46949 * 60.00004 * 9 7 2 20 20 H 1.09005 * 109.47134 * 299.99983 * 9 7 2 21 21 H 1.00899 * 110.99900 * 56.04064 * 10 9 7 22 22 H 1.09002 * 109.47104 * 59.99767 * 11 10 9 23 23 H 1.08998 * 109.46828 * 300.00600 * 11 10 9 24 24 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 25 25 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 26 26 H 1.08996 * 110.66891 * 278.15580 * 14 13 12 27 27 H 1.09001 * 110.67193 * 41.28416 * 14 13 12 28 28 H 1.08998 * 110.72475 * 204.22657 * 15 14 13 29 29 H 1.09000 * 110.72444 * 80.94246 * 15 14 13 30 30 H 1.09001 * 110.31032 * 263.03776 * 16 15 14 31 31 H 1.09004 * 110.30836 * 140.87248 * 16 15 14 32 32 H 1.08999 * 109.91618 * 333.51273 * 17 13 12 33 33 H 1.09004 * 109.91578 * 94.60372 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5054 -4.9070 -0.0024 12 6 2.5302 -6.0430 -0.0031 13 7 1.8300 -7.3343 -0.0031 14 6 0.8355 -7.4005 -1.1044 15 6 0.6043 -8.9221 -1.2824 16 6 2.0138 -9.5149 -1.0549 17 6 2.7725 -8.4484 -0.2435 18 1 -0.4851 0.8401 0.0004 19 1 0.6240 -2.5566 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.8411 -3.5490 0.7791 22 1 0.8801 -4.9808 -0.8922 23 1 0.8808 -4.9820 0.8877 24 1 3.1552 -5.9690 0.8869 25 1 3.1551 -5.9681 -0.8931 26 1 -0.0902 -6.9017 -0.8174 27 1 1.2420 -6.9639 -2.0167 28 1 0.2506 -9.1434 -2.2894 29 1 -0.0964 -9.2958 -0.5356 30 1 2.5102 -9.6878 -2.0098 31 1 1.9467 -10.4441 -0.4889 32 1 3.6319 -8.0918 -0.8112 33 1 3.1033 -8.8666 0.7072 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048298914.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:18 Heat of formation + Delta-G solvation = -27.266045 kcal Electronic energy + Delta-G solvation = -12445.961309 eV Core-core repulsion = 10312.003658 eV Total energy + Delta-G solvation = -2133.957651 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.96480 -37.20998 -34.81717 -33.06761 -30.04047 -29.45512 -27.03242 -23.96580 -23.31704 -21.67643 -21.36701 -18.58006 -17.22360 -17.04281 -16.54743 -16.26690 -15.50599 -14.76461 -14.67968 -14.51890 -13.92484 -13.55859 -13.35281 -12.99680 -12.75550 -12.57575 -12.28089 -12.24839 -12.07139 -11.92477 -11.79512 -11.42135 -11.29642 -10.67405 -9.42580 -9.20788 -8.24097 -6.36384 1.41285 1.45390 1.53517 2.39293 2.91592 3.09136 3.63188 3.77389 3.84090 4.08799 4.13262 4.26198 4.35698 4.54234 4.63368 4.72228 4.84957 4.93119 4.95377 4.98966 5.05937 5.06447 5.19887 5.21967 5.32580 5.58097 5.90912 5.98277 6.04144 6.38077 6.66985 6.85035 7.34823 8.87672 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.093890 B = 0.005497 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.149927 B = 5092.710992 C = 5283.013590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.689 5.689 11 C 0.066 3.934 12 C 0.064 3.936 13 N -0.531 5.531 14 C 0.025 3.975 15 C -0.119 4.119 16 C -0.125 4.125 17 C 0.031 3.969 18 H 0.266 0.734 19 H -0.002 1.002 20 H -0.039 1.039 21 H 0.337 0.663 22 H 0.056 0.944 23 H 0.017 0.983 24 H 0.078 0.922 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 -16.648 -1.553 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.320 5.320 11 C -0.064 4.064 12 C -0.064 4.064 13 N -0.256 5.256 14 C -0.102 4.102 15 C -0.157 4.157 16 C -0.163 4.163 17 C -0.097 4.097 18 H 0.075 0.925 19 H 0.016 0.984 20 H -0.022 1.022 21 H 0.154 0.846 22 H 0.074 0.926 23 H 0.035 0.965 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.903 -16.577 -1.727 17.118 hybrid contribution 0.053 1.166 0.169 1.179 sum 3.957 -15.411 -1.558 15.987 Atomic orbital electron populations 1.70095 1.07930 1.28205 1.51269 1.26003 0.95819 1.03564 0.94363 0.85320 0.78056 0.77277 0.79238 1.19232 1.20683 1.18957 1.21516 0.93904 0.91305 1.51072 0.91525 1.19200 0.90618 0.88915 0.93148 1.60511 1.20598 1.01492 1.49370 1.21878 0.95906 0.89245 0.99407 1.22072 0.95158 0.87906 1.01296 1.64781 1.14312 1.02642 1.43907 1.23304 0.96247 0.98260 0.92428 1.22488 0.97656 0.92888 1.02658 1.22401 0.95149 0.98398 1.00383 1.22977 0.94479 0.91710 1.00544 0.92512 0.98352 1.02181 0.84608 0.92579 0.96473 0.90341 0.94163 0.91147 0.94205 0.89629 0.90605 0.90515 0.89549 0.93708 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.56 13.29 21.44 0.28 -57.27 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.98 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.54 -31.59 9.32 25.60 0.24 -31.35 16 8 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 9 C 0.21 11.70 5.44 85.56 0.47 12.17 16 10 N -0.69 -31.20 6.49 -517.94 -3.36 -34.56 16 11 C 0.07 2.51 5.34 86.30 0.46 2.97 16 12 C 0.06 1.97 5.29 86.30 0.46 2.43 16 13 N -0.53 -14.45 5.40 -883.03 -4.77 -19.21 16 14 C 0.03 0.65 5.10 86.65 0.44 1.09 16 15 C -0.12 -2.21 7.06 31.80 0.22 -1.99 16 16 C -0.13 -2.07 6.93 31.47 0.22 -1.86 16 17 C 0.03 0.64 6.69 86.44 0.58 1.22 16 18 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 19 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 20 H -0.04 -2.37 8.14 -2.38 -0.02 -2.39 16 21 H 0.34 14.29 8.72 -89.70 -0.78 13.51 16 22 H 0.06 2.22 6.80 -2.39 -0.02 2.20 16 23 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.04 1.25 7.81 -2.39 -0.02 1.23 16 26 H 0.07 1.94 7.66 -2.39 -0.02 1.92 16 27 H 0.04 1.06 8.00 -2.39 -0.02 1.04 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.04 0.94 7.57 -2.39 -0.02 0.92 16 33 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -64.82 268.63 -1.99 -66.81 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.28 Total: 12.31 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 3.55 Total: -14.81 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -7.84 Total: -111.05 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.82 -1.99 -66.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048298914.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.547 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds