Wall clock time and date at job start Mon Mar 30 2020 02:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99833 * 2 1 4 4 H 1.48503 * 109.47306 * 270.00127 * 3 2 1 5 5 H 1.48495 * 109.47387 * 30.00413 * 3 2 1 6 6 H 1.48507 * 109.47068 * 150.00212 * 3 2 1 7 7 C 1.38812 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99912 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00315 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47369 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46850 * 180.02562 * 11 10 9 13 13 C 1.46845 * 111.00565 * 45.79157 * 12 11 10 14 14 C 1.53034 * 109.52676 * 185.84030 * 13 12 11 15 15 C 1.53126 * 109.27454 * 300.81918 * 14 13 12 16 16 C 1.53119 * 109.16048 * 57.65518 * 15 14 13 17 17 C 1.46850 * 110.99813 * 170.00223 * 12 11 10 18 18 H 0.97001 * 120.00212 * 359.97438 * 1 2 3 19 19 H 0.97007 * 120.00067 * 359.97438 * 9 7 2 20 20 H 1.09006 * 109.47054 * 59.99735 * 10 9 7 21 21 H 1.08999 * 109.46804 * 300.00143 * 10 9 7 22 22 H 1.08995 * 109.46637 * 59.99753 * 11 10 9 23 23 H 1.09001 * 109.46762 * 299.99710 * 11 10 9 24 24 H 1.08995 * 109.46315 * 65.81881 * 13 12 11 25 25 H 1.09005 * 109.45975 * 305.85394 * 13 12 11 26 26 H 1.08997 * 109.50792 * 180.88024 * 14 13 12 27 27 H 1.09006 * 109.50471 * 60.75677 * 14 13 12 28 28 H 1.08999 * 109.52028 * 177.55723 * 15 14 13 29 29 H 1.08993 * 109.52259 * 297.74866 * 15 14 13 30 30 H 1.09004 * 109.50440 * 62.28501 * 16 15 14 31 31 H 1.09003 * 109.50154 * 182.40625 * 16 15 14 32 32 H 1.09005 * 109.46186 * 54.13967 * 17 12 11 33 33 H 1.08998 * 109.46012 * 294.17361 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8198 0.0001 12 7 1.7984 -6.0919 0.0007 13 6 2.8895 -6.0692 0.9833 14 6 3.7198 -7.3483 0.8552 15 6 2.8180 -8.5625 1.0941 16 6 1.6631 -8.5361 0.0891 17 6 0.8924 -7.2226 0.2394 18 1 -0.4850 0.8400 0.0004 19 1 0.3555 -2.3881 0.0002 20 1 2.6848 -3.7145 0.8895 21 1 2.6847 -3.7145 -0.8905 22 1 0.4369 -4.7621 -0.8896 23 1 0.4376 -4.7618 0.8904 24 1 2.4720 -6.0063 1.9882 25 1 3.5256 -5.2033 0.7997 26 1 4.5202 -7.3383 1.5951 27 1 4.1490 -7.4049 -0.1452 28 1 3.3957 -9.4771 0.9611 29 1 2.4195 -8.5264 2.1079 30 1 2.0599 -8.6115 -0.9234 31 1 0.9939 -9.3748 0.2816 32 1 0.0779 -7.1945 -0.4846 33 1 0.4842 -7.1544 1.2477 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049575207.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:32 Heat of formation + Delta-G solvation = 3.770699 kcal Electronic energy + Delta-G solvation = -12740.152022 eV Core-core repulsion = 10607.540225 eV Total energy + Delta-G solvation = -2132.611797 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.90281 -35.12454 -33.18872 -31.04286 -30.59812 -27.36263 -24.38756 -23.17023 -22.49555 -20.53150 -19.53968 -17.14710 -15.83278 -14.92772 -14.68102 -14.44256 -14.25564 -13.49904 -13.34712 -13.14941 -12.88875 -12.44028 -11.95016 -11.21589 -11.12086 -10.99333 -10.78867 -10.77884 -10.58347 -10.28586 -10.17305 -9.88227 -9.68377 -8.83500 -8.04268 -6.89168 -5.73936 -3.02696 3.45992 3.50524 3.52559 4.09816 4.64399 4.85076 4.91060 4.95968 5.27972 5.46176 5.56153 5.59190 5.67071 5.70400 5.72234 5.88439 5.91608 5.95697 6.06713 6.11628 6.14378 6.19418 6.39401 6.41177 6.78329 6.88534 7.36665 7.39003 7.72736 8.45067 9.55743 10.13677 10.48446 11.49264 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.081017 B = 0.006390 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.525221 B = 4380.735450 C = 4640.550892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.151 3.849 11 C 0.050 3.950 12 N -0.535 5.535 13 C 0.047 3.953 14 C -0.117 4.117 15 C -0.121 4.121 16 C -0.116 4.116 17 C 0.055 3.945 18 H 0.255 0.745 19 H 0.383 0.617 20 H 0.021 0.979 21 H 0.027 0.973 22 H 0.075 0.925 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 -15.959 1.729 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.024 3.976 11 C -0.078 4.078 12 N -0.260 5.260 13 C -0.081 4.081 14 C -0.155 4.155 15 C -0.159 4.159 16 C -0.153 4.153 17 C -0.073 4.073 18 H 0.065 0.935 19 H 0.216 0.784 20 H 0.038 0.962 21 H 0.045 0.955 22 H 0.094 0.906 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.332 -15.897 1.275 16.525 hybrid contribution -0.307 1.067 0.814 1.376 sum 4.025 -14.830 2.089 15.508 Atomic orbital electron populations 1.69666 1.05146 1.25642 1.57919 1.24750 0.95545 0.97724 1.03078 0.86161 0.78609 0.83720 0.77545 1.21668 1.21774 1.20754 1.19233 0.91050 0.84072 1.42530 0.91142 1.42311 1.05890 1.00006 1.89596 1.20770 0.93526 0.85105 0.98215 1.22276 0.96498 0.88310 1.00730 1.61946 1.11664 1.02829 1.49609 1.22236 0.93921 0.98671 0.93272 1.21604 0.97552 0.94138 1.02172 1.21583 0.97101 0.98159 0.99041 1.21575 0.97210 0.96359 1.00191 1.22069 0.94991 0.90855 0.99427 0.93521 0.78389 0.96166 0.95463 0.90641 0.94942 0.95215 0.89481 0.91863 0.91184 0.92184 0.92508 0.91167 0.91960 0.90939 0.95242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.93 13.06 55.49 0.72 -28.20 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.48 5.60 -59.91 -0.34 -19.81 16 10 C 0.15 3.25 5.51 -4.04 -0.02 3.23 16 11 C 0.05 0.89 5.39 -3.82 -0.02 0.87 16 12 N -0.54 -8.28 4.81 -234.67 -1.13 -9.40 16 13 C 0.05 0.67 4.85 -3.84 -0.02 0.66 16 14 C -0.12 -1.36 6.09 -26.65 -0.16 -1.52 16 15 C -0.12 -1.26 6.00 -26.60 -0.16 -1.42 16 16 C -0.12 -1.24 6.09 -26.65 -0.16 -1.41 16 17 C 0.05 0.71 5.42 -3.83 -0.02 0.69 16 18 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 19 H 0.38 10.61 7.67 -40.82 -0.31 10.29 16 20 H 0.02 0.44 6.21 -51.93 -0.32 0.12 16 21 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 23 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.09 1.35 5.81 -51.93 -0.30 1.05 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 262.64 15.07 3.96 3.96 Total: -1.00 -30.71 262.64 -8.17 -38.87 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.55 Total: 3.26 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.81 Total: -6.47 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.74 Total: -57.42 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.71 -8.17 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049575207.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.645 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds