Wall clock time and date at job start Mon Mar 30 2020 02:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99833 * 2 1 4 4 H 1.48503 * 109.47306 * 270.00127 * 3 2 1 5 5 H 1.48495 * 109.47387 * 30.00413 * 3 2 1 6 6 H 1.48507 * 109.47068 * 150.00212 * 3 2 1 7 7 C 1.38812 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99912 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00315 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47369 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46850 * 180.02562 * 11 10 9 13 13 C 1.46845 * 111.00565 * 45.79157 * 12 11 10 14 14 C 1.53034 * 109.52676 * 185.84030 * 13 12 11 15 15 C 1.53126 * 109.27454 * 300.81918 * 14 13 12 16 16 C 1.53119 * 109.16048 * 57.65518 * 15 14 13 17 17 C 1.46850 * 110.99813 * 170.00223 * 12 11 10 18 18 H 0.97001 * 120.00212 * 359.97438 * 1 2 3 19 19 H 0.97007 * 120.00067 * 359.97438 * 9 7 2 20 20 H 1.09006 * 109.47054 * 59.99735 * 10 9 7 21 21 H 1.08999 * 109.46804 * 300.00143 * 10 9 7 22 22 H 1.08995 * 109.46637 * 59.99753 * 11 10 9 23 23 H 1.09001 * 109.46762 * 299.99710 * 11 10 9 24 24 H 1.08995 * 109.46315 * 65.81881 * 13 12 11 25 25 H 1.09005 * 109.45975 * 305.85394 * 13 12 11 26 26 H 1.08997 * 109.50792 * 180.88024 * 14 13 12 27 27 H 1.09006 * 109.50471 * 60.75677 * 14 13 12 28 28 H 1.08999 * 109.52028 * 177.55723 * 15 14 13 29 29 H 1.08993 * 109.52259 * 297.74866 * 15 14 13 30 30 H 1.09004 * 109.50440 * 62.28501 * 16 15 14 31 31 H 1.09003 * 109.50154 * 182.40625 * 16 15 14 32 32 H 1.09005 * 109.46186 * 54.13967 * 17 12 11 33 33 H 1.08998 * 109.46012 * 294.17361 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8198 0.0001 12 7 1.7984 -6.0919 0.0007 13 6 2.8895 -6.0692 0.9833 14 6 3.7198 -7.3483 0.8552 15 6 2.8180 -8.5625 1.0941 16 6 1.6631 -8.5361 0.0891 17 6 0.8924 -7.2226 0.2394 18 1 -0.4850 0.8400 0.0004 19 1 0.3555 -2.3881 0.0002 20 1 2.6848 -3.7145 0.8895 21 1 2.6847 -3.7145 -0.8905 22 1 0.4369 -4.7621 -0.8896 23 1 0.4376 -4.7618 0.8904 24 1 2.4720 -6.0063 1.9882 25 1 3.5256 -5.2033 0.7997 26 1 4.5202 -7.3383 1.5951 27 1 4.1490 -7.4049 -0.1452 28 1 3.3957 -9.4771 0.9611 29 1 2.4195 -8.5264 2.1079 30 1 2.0599 -8.6115 -0.9234 31 1 0.9939 -9.3748 0.2816 32 1 0.0779 -7.1945 -0.4846 33 1 0.4842 -7.1544 1.2477 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049575207.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:32 Heat of formation + Delta-G solvation = -17.362300 kcal Electronic energy + Delta-G solvation = -12741.068418 eV Core-core repulsion = 10607.540225 eV Total energy + Delta-G solvation = -2133.528192 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.05490 -36.87618 -34.73255 -32.81732 -31.75970 -29.04293 -25.97844 -24.66253 -23.77437 -22.01651 -20.57538 -19.24897 -17.21700 -16.49157 -16.16600 -15.88702 -15.40059 -15.09639 -14.93836 -14.46815 -14.24410 -13.79991 -13.06270 -12.96677 -12.88841 -12.48001 -12.37732 -12.10770 -12.09553 -11.81687 -11.56634 -11.24107 -11.15397 -10.92153 -9.29496 -9.05427 -7.98340 -5.28899 1.46663 1.49394 1.57860 2.52379 2.90355 3.35306 3.87691 3.92610 4.02023 4.11518 4.21214 4.28735 4.38274 4.50700 4.56414 4.67636 4.68356 4.86929 4.96315 5.03719 5.08132 5.15221 5.18849 5.24804 5.31619 5.45420 5.50768 6.07126 6.19849 6.24400 7.29359 8.02299 8.27247 9.25544 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.081017 B = 0.006390 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.525221 B = 4380.735450 C = 4640.550892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.747 5.747 10 C 0.156 3.844 11 C 0.064 3.936 12 N -0.539 5.539 13 C 0.044 3.956 14 C -0.112 4.112 15 C -0.119 4.119 16 C -0.111 4.111 17 C 0.050 3.950 18 H 0.253 0.747 19 H 0.373 0.627 20 H 0.025 0.975 21 H 0.022 0.978 22 H 0.071 0.929 23 H 0.026 0.974 24 H 0.024 0.976 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -17.051 1.926 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.390 5.390 10 C 0.029 3.971 11 C -0.065 4.065 12 N -0.265 5.265 13 C -0.084 4.084 14 C -0.150 4.150 15 C -0.157 4.157 16 C -0.149 4.149 17 C -0.078 4.078 18 H 0.062 0.938 19 H 0.205 0.795 20 H 0.042 0.958 21 H 0.040 0.960 22 H 0.089 0.911 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.394 -17.030 1.473 17.925 hybrid contribution -0.614 1.337 0.755 1.654 sum 4.780 -15.693 2.228 16.555 Atomic orbital electron populations 1.69827 1.06745 1.26315 1.59227 1.25642 0.96481 1.01322 1.03257 0.85061 0.77663 0.78949 0.77596 1.21141 1.21902 1.19317 1.19640 0.91549 0.85217 1.41826 0.90618 1.42517 1.05661 1.01232 1.89606 1.20829 0.93916 0.84475 0.97849 1.22013 0.95556 0.88693 1.00204 1.61988 1.12083 1.02152 1.50266 1.22282 0.93645 0.99838 0.92638 1.21590 0.97709 0.93126 1.02585 1.21595 0.96853 0.98292 0.98948 1.21575 0.97535 0.95466 1.00287 1.22209 0.95104 0.91021 0.99419 0.93816 0.79511 0.95765 0.95982 0.91086 0.95601 0.95729 0.91144 0.90329 0.91415 0.90057 0.92326 0.91359 0.89757 0.90697 0.95374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.74 13.06 21.65 0.28 -60.46 16 2 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 3 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.75 -40.22 5.60 -343.44 -1.92 -42.15 16 10 C 0.16 6.74 5.51 86.38 0.48 7.22 16 11 C 0.06 2.30 5.39 86.30 0.46 2.77 16 12 N -0.54 -16.27 4.81 -896.37 -4.31 -20.57 16 13 C 0.04 1.22 4.85 86.33 0.42 1.64 16 14 C -0.11 -2.37 6.09 30.65 0.19 -2.19 16 15 C -0.12 -2.12 6.00 30.68 0.18 -1.94 16 16 C -0.11 -2.09 6.09 30.65 0.19 -1.91 16 17 C 0.05 1.23 5.42 86.32 0.47 1.70 16 18 H 0.25 15.23 8.31 -92.71 -0.77 14.45 16 19 H 0.37 21.17 7.67 -92.70 -0.71 20.46 16 20 H 0.02 1.05 6.21 -2.38 -0.01 1.03 16 21 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 23 H 0.03 0.96 8.08 -2.39 -0.02 0.94 16 24 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 2.17 5.81 -2.38 -0.01 2.15 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.79 8.12 -2.38 -0.02 1.77 16 33 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -64.59 262.64 0.13 -64.46 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.35 Total: 20.21 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 3.69 Total: -10.38 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.95 Total: -123.18 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -64.59 0.13 -64.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049575207.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.100 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds