Wall clock time and date at job start Mon Mar 30 2020 02:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47307 * 2 1 4 4 C 1.53004 * 109.47248 * 240.00012 * 2 1 3 5 5 C 1.53006 * 109.47060 * 300.00311 * 4 2 1 6 6 C 1.53005 * 109.47031 * 299.99833 * 5 4 2 7 7 C 1.53004 * 109.47062 * 60.00168 * 6 5 4 8 8 H 1.09004 * 109.46994 * 59.99786 * 7 6 5 9 9 C 1.52997 * 109.47136 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.46987 * 120.00091 * 2 1 3 11 11 O 1.42898 * 109.47337 * 179.97438 * 10 2 1 12 12 C 1.50703 * 109.47187 * 300.00238 * 10 2 1 13 13 H 1.07996 * 120.00113 * 122.49879 * 12 10 2 14 14 C 1.37879 * 119.99543 * 302.50628 * 12 10 2 15 15 N 1.31512 * 120.00203 * 352.81201 * 14 12 10 16 16 Si 1.86797 * 119.99848 * 172.54206 * 14 12 10 17 17 H 1.48501 * 109.46996 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47113 * 119.99450 * 16 14 12 19 19 H 1.48496 * 109.47339 * 239.99926 * 16 14 12 20 20 H 1.08991 * 109.46930 * 300.00113 * 1 2 3 21 21 H 1.09003 * 109.46542 * 59.99963 * 1 2 3 22 22 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46994 * 180.02562 * 4 2 1 24 24 H 1.08996 * 109.46909 * 60.00000 * 4 2 1 25 25 H 1.09000 * 109.46793 * 180.02562 * 5 4 2 26 26 H 1.08996 * 109.47319 * 59.99831 * 5 4 2 27 27 H 1.08996 * 109.47067 * 300.00152 * 6 5 4 28 28 H 1.08999 * 109.47171 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47148 * 179.97438 * 9 7 6 30 30 H 1.08999 * 109.47298 * 299.99914 * 9 7 6 31 31 H 1.09004 * 109.47191 * 60.00106 * 9 7 6 32 32 H 0.96703 * 113.99483 * 54.05148 * 11 10 2 33 33 H 0.97004 * 120.00104 * 5.31962 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0400 -2.8851 0.0000 7 6 1.5299 -2.1638 1.2492 8 1 0.4399 -2.1638 1.2492 9 6 2.0394 -2.8854 2.4985 10 6 2.0400 -0.7213 1.2493 11 8 3.4690 -0.7219 1.2491 12 6 1.5376 -0.0109 2.4798 13 1 0.9504 -0.5468 3.2108 14 6 1.8275 1.3232 2.6722 15 7 2.6571 1.9398 1.8590 16 14 1.0362 2.2569 4.0833 17 1 0.1446 1.3438 4.8426 18 1 2.0934 2.7792 4.9859 19 1 0.2419 3.3896 3.5437 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1301 -0.7216 -1.2490 24 1 1.6767 -0.2074 -2.1392 25 1 1.8937 -2.6777 -2.1391 26 1 0.4400 -2.1638 -1.2493 27 1 3.1299 -2.8851 0.0000 28 1 1.6762 -3.9126 0.0002 29 1 1.6764 -2.3714 3.3885 30 1 1.6756 -3.9130 2.4983 31 1 3.1294 -2.8858 2.4987 32 1 3.8626 0.1567 1.1573 33 1 3.0049 1.4786 1.0797 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059072605.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:59 Heat of formation + Delta-G solvation = -72.499270 kcal Electronic energy + Delta-G solvation = -14176.600361 eV Core-core repulsion = 12008.388499 eV Total energy + Delta-G solvation = -2168.211862 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.09638 -34.40212 -32.58361 -31.84690 -29.92835 -25.68585 -25.63468 -23.92630 -21.03122 -20.19812 -17.89908 -17.65142 -14.87254 -14.29055 -14.12680 -13.77037 -13.64897 -13.18582 -12.42460 -12.05086 -11.94596 -11.36545 -11.24448 -11.16139 -10.87230 -10.72080 -10.53679 -10.27172 -10.11822 -9.95723 -9.86189 -9.61798 -9.38499 -8.69884 -8.38036 -7.75758 -6.32049 -4.14669 3.41358 3.42930 3.57235 4.47259 5.19361 5.50697 5.53403 5.59831 5.94771 6.01746 6.12933 6.21313 6.25081 6.30085 6.35608 6.52463 6.57868 6.62258 6.64063 6.73289 6.81742 6.93021 7.05076 7.15248 7.23679 7.31897 7.45467 7.60912 8.13570 8.40481 8.76528 9.24464 9.55297 10.92120 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041393 B = 0.015342 C = 0.013796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.274054 B = 1824.631557 C = 2029.143130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.111 4.111 7 C -0.065 4.065 8 H 0.064 0.936 9 C -0.130 4.130 10 C 0.248 3.752 11 O -0.589 6.589 12 C -0.599 4.599 13 H 0.054 0.946 14 C 0.028 3.972 15 N -0.915 5.915 16 Si 1.068 2.932 17 H -0.289 1.289 18 H -0.287 1.287 19 H -0.287 1.287 20 H 0.063 0.937 21 H 0.028 0.972 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.362 0.638 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -4.938 -3.377 6.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.149 4.149 7 C -0.084 4.084 8 H 0.083 0.917 9 C -0.187 4.187 10 C 0.209 3.791 11 O -0.397 6.397 12 C -0.637 4.637 13 H 0.073 0.927 14 C -0.175 4.175 15 N -0.559 5.559 16 Si 0.897 3.103 17 H -0.215 1.215 18 H -0.214 1.214 19 H -0.213 1.213 20 H 0.082 0.918 21 H 0.047 0.953 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.211 0.789 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.852 -4.151 -2.552 5.646 hybrid contribution 0.037 -0.792 -0.868 1.176 sum -2.815 -4.943 -3.420 6.637 Atomic orbital electron populations 1.21691 0.96107 1.00256 1.00355 1.21896 0.96019 1.01026 0.95378 0.90262 1.21544 1.00394 0.95159 0.97846 1.21511 1.00196 0.96349 0.97143 1.21558 1.01142 0.97177 0.94988 1.20973 0.98762 0.95276 0.93361 0.91738 1.21640 1.01264 0.97056 0.98718 1.18802 0.78121 0.90687 0.91501 1.86293 1.22578 1.34044 1.96774 1.22502 1.36669 0.97048 1.07515 0.92726 1.25741 0.94439 0.95288 1.02057 1.70941 1.28658 1.41978 1.14322 0.83560 0.76025 0.75476 0.75258 1.21521 1.21389 1.21342 0.91762 0.95286 0.93706 0.92466 0.93920 0.93634 0.92523 0.91872 0.93909 0.92217 0.95432 0.92874 0.78861 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.25 37.16 0.31 -2.34 16 2 C -0.12 -2.77 2.05 -90.61 -0.19 -2.96 16 3 H 0.08 1.98 5.39 -51.93 -0.28 1.70 16 4 C -0.11 -2.18 5.31 -26.73 -0.14 -2.32 16 5 C -0.11 -2.02 5.65 -26.73 -0.15 -2.18 16 6 C -0.11 -2.10 5.06 -26.73 -0.14 -2.24 16 7 C -0.07 -1.40 1.77 -90.62 -0.16 -1.56 16 8 H 0.06 1.37 6.43 -51.93 -0.33 1.04 16 9 C -0.13 -2.69 8.80 37.16 0.33 -2.36 16 10 C 0.25 5.93 0.13 -91.76 -0.01 5.92 16 11 O -0.59 -14.87 10.94 -35.23 -0.39 -15.26 16 12 C -0.60 -15.91 6.31 -34.44 -0.22 -16.13 16 13 H 0.05 1.48 6.63 -52.49 -0.35 1.13 16 14 C 0.03 0.75 5.18 -17.82 -0.09 0.66 16 15 N -0.92 -25.66 12.62 55.43 0.70 -24.96 16 16 Si 1.07 24.59 29.91 -169.99 -5.08 19.50 16 17 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H 0.06 1.45 7.22 -51.93 -0.37 1.07 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.04 0.87 4.81 -51.93 -0.25 0.62 16 23 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.97 6.43 -51.93 -0.33 0.63 16 27 H 0.06 1.27 7.68 -51.93 -0.40 0.87 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.31 6.57 -51.93 -0.34 0.96 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 1.15 7.68 -51.93 -0.40 0.75 16 32 H 0.36 9.29 6.23 45.56 0.28 9.57 16 33 H 0.27 7.32 3.48 -40.82 -0.14 7.17 16 LS Contribution 240.21 15.07 3.62 3.62 Total: -1.00 -27.68 240.21 -5.84 -33.51 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.22 Total: 9.07 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -0.46 Total: -25.49 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.70 Total: -24.96 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.39 Total: -15.26 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.08 Total: 19.50 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.68 -5.84 -33.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059072605.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.985 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds