Wall clock time and date at job start Mon Mar 30 2020 02:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47307 * 2 1 4 4 C 1.53004 * 109.47248 * 240.00012 * 2 1 3 5 5 C 1.53006 * 109.47060 * 300.00311 * 4 2 1 6 6 C 1.53005 * 109.47031 * 299.99833 * 5 4 2 7 7 C 1.53004 * 109.47062 * 60.00168 * 6 5 4 8 8 H 1.09004 * 109.46994 * 59.99786 * 7 6 5 9 9 C 1.52997 * 109.47136 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.46987 * 120.00091 * 2 1 3 11 11 O 1.42898 * 109.47337 * 179.97438 * 10 2 1 12 12 C 1.50703 * 109.47187 * 300.00238 * 10 2 1 13 13 H 1.07996 * 120.00113 * 122.49879 * 12 10 2 14 14 C 1.37879 * 119.99543 * 302.50628 * 12 10 2 15 15 N 1.31512 * 120.00203 * 352.81201 * 14 12 10 16 16 Si 1.86797 * 119.99848 * 172.54206 * 14 12 10 17 17 H 1.48501 * 109.46996 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47113 * 119.99450 * 16 14 12 19 19 H 1.48496 * 109.47339 * 239.99926 * 16 14 12 20 20 H 1.08991 * 109.46930 * 300.00113 * 1 2 3 21 21 H 1.09003 * 109.46542 * 59.99963 * 1 2 3 22 22 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46994 * 180.02562 * 4 2 1 24 24 H 1.08996 * 109.46909 * 60.00000 * 4 2 1 25 25 H 1.09000 * 109.46793 * 180.02562 * 5 4 2 26 26 H 1.08996 * 109.47319 * 59.99831 * 5 4 2 27 27 H 1.08996 * 109.47067 * 300.00152 * 6 5 4 28 28 H 1.08999 * 109.47171 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47148 * 179.97438 * 9 7 6 30 30 H 1.08999 * 109.47298 * 299.99914 * 9 7 6 31 31 H 1.09004 * 109.47191 * 60.00106 * 9 7 6 32 32 H 0.96703 * 113.99483 * 54.05148 * 11 10 2 33 33 H 0.97004 * 120.00104 * 5.31962 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0400 -2.8851 0.0000 7 6 1.5299 -2.1638 1.2492 8 1 0.4399 -2.1638 1.2492 9 6 2.0394 -2.8854 2.4985 10 6 2.0400 -0.7213 1.2493 11 8 3.4690 -0.7219 1.2491 12 6 1.5376 -0.0109 2.4798 13 1 0.9504 -0.5468 3.2108 14 6 1.8275 1.3232 2.6722 15 7 2.6571 1.9398 1.8590 16 14 1.0362 2.2569 4.0833 17 1 0.1446 1.3438 4.8426 18 1 2.0934 2.7792 4.9859 19 1 0.2419 3.3896 3.5437 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1301 -0.7216 -1.2490 24 1 1.6767 -0.2074 -2.1392 25 1 1.8937 -2.6777 -2.1391 26 1 0.4400 -2.1638 -1.2493 27 1 3.1299 -2.8851 0.0000 28 1 1.6762 -3.9126 0.0002 29 1 1.6764 -2.3714 3.3885 30 1 1.6756 -3.9130 2.4983 31 1 3.1294 -2.8858 2.4987 32 1 3.8626 0.1567 1.1573 33 1 3.0049 1.4786 1.0797 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059072605.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:58 Heat of formation + Delta-G solvation = -89.225337 kcal Electronic energy + Delta-G solvation = -14177.325658 eV Core-core repulsion = 12008.388499 eV Total energy + Delta-G solvation = -2168.937159 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.84118 -36.21640 -34.42229 -33.69678 -31.61792 -27.58054 -27.24586 -25.74498 -22.69352 -21.88838 -19.77718 -19.49320 -16.62961 -16.06696 -15.82158 -15.66457 -15.35530 -14.90819 -14.15529 -13.69950 -13.59129 -13.15866 -13.01684 -12.82474 -12.68270 -12.37173 -12.27697 -11.99525 -11.92822 -11.66264 -11.57166 -11.28723 -11.02160 -10.51324 -10.34635 -9.69581 -8.42208 -6.26800 1.52889 1.58821 1.75446 2.56500 3.15657 3.89840 3.96007 4.03755 4.22342 4.37822 4.47664 4.59570 4.66471 4.71192 4.84846 4.90161 4.98862 5.01871 5.06512 5.17115 5.22499 5.35962 5.37254 5.43794 5.56804 5.63482 5.71559 5.84144 6.16081 6.30664 6.69255 7.23369 7.49312 8.82153 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041393 B = 0.015342 C = 0.013796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.274054 B = 1824.631557 C = 2029.143130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 H 0.046 0.954 4 C -0.109 4.109 5 C -0.110 4.110 6 C -0.107 4.107 7 C -0.069 4.069 8 H 0.067 0.933 9 C -0.125 4.125 10 C 0.237 3.763 11 O -0.596 6.596 12 C -0.608 4.608 13 H 0.042 0.958 14 C -0.015 4.015 15 N -0.937 5.937 16 Si 1.105 2.895 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.281 1.281 20 H 0.038 0.962 21 H 0.048 0.952 22 H 0.061 0.939 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.356 0.644 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 -6.143 -4.204 8.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.143 4.143 3 H 0.065 0.935 4 C -0.146 4.146 5 C -0.148 4.148 6 C -0.144 4.144 7 C -0.088 4.088 8 H 0.085 0.915 9 C -0.182 4.182 10 C 0.198 3.802 11 O -0.403 6.403 12 C -0.646 4.646 13 H 0.061 0.939 14 C -0.214 4.214 15 N -0.582 5.582 16 Si 0.930 3.070 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.207 1.207 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.204 0.796 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.903 -5.375 -3.386 7.456 hybrid contribution 0.381 -0.439 -0.599 0.835 sum -3.522 -5.814 -3.985 7.880 Atomic orbital electron populations 1.21621 0.94875 1.01233 1.00095 1.21791 0.97032 0.99294 0.96185 0.93539 1.21500 0.99619 0.96620 0.96871 1.21510 1.00865 0.94741 0.97638 1.21518 1.00152 0.98587 0.94168 1.21013 0.98818 0.93907 0.95040 0.91456 1.21578 1.00130 0.98785 0.97713 1.19020 0.77258 0.92579 0.91327 1.86284 1.23641 1.33538 1.96847 1.22766 1.36187 0.97293 1.08334 0.93922 1.26807 0.94476 0.96485 1.03586 1.70996 1.29869 1.42367 1.14976 0.83065 0.75641 0.74967 0.73344 1.20223 1.21252 1.20675 0.94287 0.93296 0.92013 0.93770 0.92114 0.90784 0.91326 0.93455 0.91031 0.94249 0.92074 0.94489 0.79600 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 8.25 71.98 0.59 -4.27 16 2 C -0.12 -5.46 2.05 -10.79 -0.02 -5.48 16 3 H 0.05 2.36 5.39 -2.39 -0.01 2.34 16 4 C -0.11 -4.02 5.31 30.60 0.16 -3.85 16 5 C -0.11 -3.49 5.65 30.60 0.17 -3.31 16 6 C -0.11 -3.72 5.06 30.60 0.15 -3.56 16 7 C -0.07 -2.85 1.77 -10.79 -0.02 -2.87 16 8 H 0.07 2.72 6.43 -2.38 -0.02 2.70 16 9 C -0.12 -5.03 8.80 71.98 0.63 -4.39 16 10 C 0.24 11.31 0.13 -11.54 0.00 11.31 16 11 O -0.60 -30.56 10.94 -148.98 -1.63 -32.18 16 12 C -0.61 -32.59 6.31 25.60 0.16 -32.43 16 13 H 0.04 2.34 6.63 -2.91 -0.02 2.32 16 14 C -0.01 -0.81 5.18 84.66 0.44 -0.37 16 15 N -0.94 -53.58 12.62 21.45 0.27 -53.31 16 16 Si 1.11 49.81 29.91 68.60 2.05 51.86 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H 0.04 1.73 7.22 -2.39 -0.02 1.71 16 21 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.06 2.23 4.81 -2.39 -0.01 2.22 16 23 H 0.04 1.73 7.68 -2.38 -0.02 1.71 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.07 2.03 6.43 -2.39 -0.02 2.02 16 27 H 0.05 1.80 7.68 -2.39 -0.02 1.78 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.70 6.57 -2.39 -0.02 1.69 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.57 7.68 -2.38 -0.02 1.55 16 32 H 0.36 18.86 6.23 -74.06 -0.46 18.40 16 33 H 0.27 14.89 3.48 -92.71 -0.32 14.56 16 Total: -1.00 -58.90 240.21 4.05 -54.85 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 1.08 Total: 28.01 kcal Atomic # 6 Polarization: -51.51 SS G_CDS: 2.27 Total: -49.24 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.27 Total: -53.31 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.63 Total: -32.18 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.05 Total: 51.86 kcal Total: -58.90 4.05 -54.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059072605.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.371 kcal (2) G-P(sol) polarization free energy of solvation -58.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds