Wall clock time and date at job start Mon Mar 30 2020 02:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10 14 14 C 1.48533 * 110.99670 * 52.60024 * 13 12 11 15 15 C 1.54936 * 103.22827 * 159.72645 * 14 13 12 16 16 C 1.54602 * 102.91755 * 322.58844 * 15 14 13 17 17 C 1.47895 * 111.00585 * 169.99973 * 13 12 11 18 18 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 19 19 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 21 21 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 22 22 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 23 23 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 24 24 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 25 25 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 26 26 H 1.09002 * 110.67270 * 278.16471 * 14 13 12 27 27 H 1.08998 * 110.66667 * 41.29259 * 14 13 12 28 28 H 1.09002 * 110.72666 * 204.23420 * 15 14 13 29 29 H 1.08998 * 110.72369 * 80.94172 * 15 14 13 30 30 H 1.09001 * 110.30688 * 263.03605 * 16 15 14 31 31 H 1.08996 * 110.30747 * 140.87557 * 16 15 14 32 32 H 1.08994 * 109.91810 * 333.51090 * 17 13 12 33 33 H 1.08999 * 109.91451 * 94.60787 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 6 1.8290 -6.1446 -0.0029 13 7 0.8745 -7.2613 -0.0029 14 6 -0.1119 -7.1183 -1.1041 15 6 -0.6559 -8.5581 -1.2820 16 6 0.5989 -9.4322 -1.0546 17 6 1.5636 -8.5477 -0.2433 18 1 -0.4851 0.8400 0.0004 19 1 0.3556 -2.3881 -0.0016 20 1 2.6855 -3.7140 -0.8911 21 1 2.6842 -3.7148 0.8888 22 1 0.4370 -4.7622 0.8875 23 1 0.4377 -4.7618 -0.8924 24 1 2.4557 -6.2019 -0.8929 25 1 2.4556 -6.2028 0.8871 26 1 -0.9130 -6.4371 -0.8171 27 1 0.3769 -6.7763 -2.0164 28 1 -1.0479 -8.7007 -2.2891 29 1 -1.4190 -8.7771 -0.5352 30 1 1.0481 -9.7049 -2.0095 31 1 0.3392 -10.3268 -0.4886 32 1 2.4785 -8.3784 -0.8109 33 1 1.7997 -9.0257 0.7074 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060572618.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:16 Heat of formation + Delta-G solvation = 4.084202 kcal Electronic energy + Delta-G solvation = -12463.790432 eV Core-core repulsion = 10331.192230 eV Total energy + Delta-G solvation = -2132.598202 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.94609 -35.31804 -33.12000 -31.10347 -29.10951 -28.46919 -24.81420 -22.73938 -21.46358 -20.74075 -20.06565 -16.98189 -16.01241 -15.88585 -14.88364 -14.50202 -14.02306 -13.30563 -13.24874 -13.03449 -12.68756 -12.23518 -11.57722 -11.44020 -11.27229 -11.10627 -10.83590 -10.74614 -10.60106 -10.53759 -10.29955 -9.99078 -9.65205 -8.82885 -8.34651 -6.87354 -5.72218 -3.00822 3.46440 3.51046 3.53257 4.05052 4.58477 4.64960 4.67365 4.89040 5.25869 5.32470 5.40306 5.47998 5.60724 5.63949 5.69504 5.76737 5.81697 5.94071 6.00941 6.08372 6.11302 6.23296 6.35938 6.44937 6.90538 6.93385 6.98359 7.15660 7.73592 8.46959 9.57683 10.16795 10.51705 11.50949 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.093408 B = 0.005552 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.687633 B = 5041.759625 C = 5243.765157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.154 3.846 11 C -0.125 4.125 12 C 0.052 3.948 13 N -0.519 5.519 14 C 0.033 3.967 15 C -0.125 4.125 16 C -0.131 4.131 17 C 0.034 3.966 18 H 0.255 0.745 19 H 0.384 0.616 20 H 0.015 0.985 21 H 0.018 0.982 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 -17.275 -2.202 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.026 3.974 11 C -0.163 4.163 12 C -0.077 4.077 13 N -0.243 5.243 14 C -0.095 4.095 15 C -0.163 4.163 16 C -0.169 4.169 17 C -0.094 4.094 18 H 0.065 0.935 19 H 0.217 0.783 20 H 0.033 0.967 21 H 0.036 0.964 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.968 -17.142 -1.677 17.251 hybrid contribution 0.645 0.987 -0.795 1.422 sum 1.612 -16.156 -2.472 16.423 Atomic orbital electron populations 1.69666 1.05125 1.25606 1.57956 1.24744 0.95534 0.97691 1.03136 0.86176 0.78642 0.83813 0.77488 1.21750 1.21745 1.20762 1.19255 0.91052 0.84242 1.42465 0.91207 1.42362 1.05908 1.00038 1.89467 1.20589 0.93531 0.85660 0.97603 1.21778 0.99070 0.92875 1.02578 1.22267 0.94093 0.90593 1.00723 1.64812 1.14616 1.01714 1.43174 1.23256 0.96145 0.97107 0.92984 1.22498 0.97541 0.94689 1.01578 1.22394 0.96096 0.98597 0.99818 1.22868 0.96003 0.90952 0.99615 0.93535 0.78290 0.96680 0.96372 0.91163 0.92013 0.94819 0.90656 0.89625 0.93647 0.91254 0.90814 0.91752 0.91221 0.93936 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.06 55.49 0.72 -28.34 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.61 5.60 -59.91 -0.34 -19.95 16 10 C 0.15 3.29 6.26 -4.04 -0.03 3.27 16 11 C -0.12 -2.19 4.99 -26.74 -0.13 -2.32 16 12 C 0.05 0.76 5.03 -3.83 -0.02 0.74 16 13 N -0.52 -7.05 5.40 -230.47 -1.24 -8.29 16 14 C 0.03 0.41 5.10 -1.90 -0.01 0.40 16 15 C -0.12 -1.26 7.06 -24.87 -0.18 -1.44 16 16 C -0.13 -1.23 6.93 -25.37 -0.18 -1.41 16 17 C 0.03 0.38 6.69 -2.76 -0.02 0.36 16 18 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 19 H 0.38 10.71 7.67 -40.82 -0.31 10.40 16 20 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 21 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.06 1.09 6.79 -51.93 -0.35 0.74 16 24 H 0.03 0.48 7.81 -51.93 -0.41 0.08 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.13 7.67 -51.93 -0.40 0.74 16 27 H 0.05 0.58 8.00 -51.93 -0.42 0.17 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.46 7.57 -51.93 -0.39 0.07 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 267.41 15.07 4.03 4.03 Total: -1.00 -31.20 267.41 -8.28 -39.48 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.63 Total: 3.26 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.80 Total: -8.07 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.85 Total: -56.59 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.20 -8.28 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060572618.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.568 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds