Wall clock time and date at job start Mon Mar 30 2020 02:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10 14 14 C 1.48533 * 110.99670 * 52.60024 * 13 12 11 15 15 C 1.54936 * 103.22827 * 159.72645 * 14 13 12 16 16 C 1.54602 * 102.91755 * 322.58844 * 15 14 13 17 17 C 1.47895 * 111.00585 * 169.99973 * 13 12 11 18 18 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 19 19 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 21 21 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 22 22 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 23 23 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 24 24 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 25 25 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 26 26 H 1.09002 * 110.67270 * 278.16471 * 14 13 12 27 27 H 1.08998 * 110.66667 * 41.29259 * 14 13 12 28 28 H 1.09002 * 110.72666 * 204.23420 * 15 14 13 29 29 H 1.08998 * 110.72369 * 80.94172 * 15 14 13 30 30 H 1.09001 * 110.30688 * 263.03605 * 16 15 14 31 31 H 1.08996 * 110.30747 * 140.87557 * 16 15 14 32 32 H 1.08994 * 109.91810 * 333.51090 * 17 13 12 33 33 H 1.08999 * 109.91451 * 94.60787 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 6 1.8290 -6.1446 -0.0029 13 7 0.8745 -7.2613 -0.0029 14 6 -0.1119 -7.1183 -1.1041 15 6 -0.6559 -8.5581 -1.2820 16 6 0.5989 -9.4322 -1.0546 17 6 1.5636 -8.5477 -0.2433 18 1 -0.4851 0.8400 0.0004 19 1 0.3556 -2.3881 -0.0016 20 1 2.6855 -3.7140 -0.8911 21 1 2.6842 -3.7148 0.8888 22 1 0.4370 -4.7622 0.8875 23 1 0.4377 -4.7618 -0.8924 24 1 2.4557 -6.2019 -0.8929 25 1 2.4556 -6.2028 0.8871 26 1 -0.9130 -6.4371 -0.8171 27 1 0.3769 -6.7763 -2.0164 28 1 -1.0479 -8.7007 -2.2891 29 1 -1.4190 -8.7771 -0.5352 30 1 1.0481 -9.7049 -2.0095 31 1 0.3392 -10.3268 -0.4886 32 1 2.4785 -8.3784 -0.8109 33 1 1.7997 -9.0257 0.7074 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060572618.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:16 Heat of formation + Delta-G solvation = -17.631170 kcal Electronic energy + Delta-G solvation = -12464.732081 eV Core-core repulsion = 10331.192230 eV Total energy + Delta-G solvation = -2133.539852 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.93983 -37.09198 -34.72879 -32.82773 -30.40550 -29.64422 -26.56220 -24.37197 -22.89520 -21.65797 -21.26908 -19.12213 -17.08805 -16.99345 -16.41452 -16.17623 -15.37998 -15.04196 -14.92246 -14.28923 -13.87835 -13.37656 -13.08517 -12.91681 -12.69756 -12.29984 -12.25241 -12.16659 -12.06011 -11.97578 -11.70900 -11.64814 -11.38923 -10.95356 -9.37958 -9.03917 -7.97248 -5.27558 1.46565 1.49222 1.57898 2.54501 3.03011 3.36193 3.68204 3.78976 3.98113 4.06750 4.16470 4.34603 4.38782 4.52058 4.58301 4.69243 4.77454 4.77811 4.86170 4.94661 4.99505 5.07881 5.19397 5.31062 5.34140 5.34677 5.46763 5.96979 6.08462 6.25100 7.30541 8.05577 8.29713 9.26694 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.093408 B = 0.005552 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.687633 B = 5041.759625 C = 5243.765157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.252 4.252 8 H 0.076 0.924 9 N -0.749 5.749 10 C 0.153 3.847 11 C -0.109 4.109 12 C 0.061 3.939 13 N -0.533 5.533 14 C 0.027 3.973 15 C -0.121 4.121 16 C -0.126 4.126 17 C 0.030 3.970 18 H 0.253 0.747 19 H 0.373 0.627 20 H 0.020 0.980 21 H 0.022 0.978 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 -18.274 -2.463 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.384 4.384 8 H 0.094 0.906 9 N -0.392 5.392 10 C 0.026 3.974 11 C -0.147 4.147 12 C -0.067 4.067 13 N -0.258 5.258 14 C -0.101 4.101 15 C -0.159 4.159 16 C -0.164 4.164 17 C -0.098 4.098 18 H 0.061 0.939 19 H 0.205 0.795 20 H 0.038 0.962 21 H 0.040 0.960 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.925 -18.182 -1.940 18.386 hybrid contribution 0.364 1.235 -0.710 1.470 sum 2.289 -16.947 -2.650 17.305 Atomic orbital electron populations 1.69829 1.06762 1.26270 1.59322 1.25642 0.96468 1.01338 1.03364 0.85070 0.77680 0.79009 0.77568 1.21159 1.21935 1.19308 1.19683 0.91596 0.85405 1.41687 0.90576 1.42604 1.05671 1.01366 1.89527 1.20743 0.94102 0.84899 0.97622 1.21579 0.98149 0.93208 1.01756 1.22106 0.93924 0.89501 1.01217 1.64795 1.14793 1.02281 1.43890 1.23290 0.95683 0.98694 0.92430 1.22494 0.97911 0.92909 1.02545 1.22401 0.95131 0.98507 1.00361 1.22972 0.96422 0.89960 1.00444 0.93855 0.79527 0.96241 0.96045 0.92351 0.92464 0.94268 0.90197 0.91033 0.94114 0.89746 0.90764 0.90546 0.89750 0.93610 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.75 -40.41 5.60 -343.45 -1.92 -42.34 16 10 C 0.15 6.50 6.26 86.38 0.54 7.04 16 11 C -0.11 -3.80 4.99 30.59 0.15 -3.65 16 12 C 0.06 1.73 5.03 86.30 0.43 2.16 16 13 N -0.53 -13.81 5.40 -883.07 -4.76 -18.57 16 14 C 0.03 0.65 5.10 86.65 0.44 1.09 16 15 C -0.12 -2.19 7.06 31.80 0.22 -1.97 16 16 C -0.13 -2.02 6.93 31.47 0.22 -1.81 16 17 C 0.03 0.60 6.69 86.45 0.58 1.18 16 18 H 0.25 15.29 8.31 -92.71 -0.77 14.51 16 19 H 0.37 21.32 7.67 -92.71 -0.71 20.61 16 20 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 21 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.06 2.04 6.79 -2.39 -0.02 2.02 16 24 H 0.04 1.06 7.81 -2.39 -0.02 1.04 16 25 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.07 1.90 7.67 -2.39 -0.02 1.89 16 27 H 0.04 1.02 8.00 -2.39 -0.02 1.00 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.89 7.57 -2.39 -0.02 0.88 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.43 267.41 -0.13 -65.56 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.35 Total: 21.01 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 3.90 Total: -13.83 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -6.41 Total: -121.74 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -65.43 -0.13 -65.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060572618.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.931 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds