Wall clock time and date at job start Mon Mar 30 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00185 * 2 1 4 4 H 1.48503 * 109.47490 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47238 * 59.99684 * 3 2 1 6 6 H 1.48503 * 109.46924 * 300.00025 * 3 2 1 7 7 C 1.38815 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00140 * 155.49734 * 7 2 1 9 9 N 1.36936 * 120.00116 * 335.49670 * 7 2 1 10 10 C 1.46922 * 120.63168 * 328.57814 * 9 7 2 11 11 C 1.53199 * 108.77521 * 233.58404 * 10 9 7 12 12 C 1.53037 * 109.31181 * 305.36374 * 11 10 9 13 13 C 1.53041 * 109.53833 * 61.36265 * 12 11 10 14 14 C 1.46928 * 120.63138 * 148.29340 * 9 7 2 15 15 H 1.08995 * 109.58811 * 246.20425 * 14 9 7 16 16 C 1.53000 * 109.58444 * 6.63023 * 14 9 7 17 17 C 1.53006 * 109.47081 * 182.16100 * 16 14 9 18 18 N 1.46896 * 109.46934 * 181.42713 * 17 16 14 19 19 H 0.97005 * 119.99624 * 174.20752 * 1 2 3 20 20 H 1.08998 * 109.58815 * 353.36810 * 10 9 7 21 21 H 1.09003 * 109.58855 * 113.65349 * 10 9 7 22 22 H 1.09002 * 109.49527 * 65.31746 * 11 10 9 23 23 H 1.08997 * 109.49605 * 185.41001 * 11 10 9 24 24 H 1.08997 * 109.46060 * 181.38674 * 12 11 10 25 25 H 1.09000 * 109.45996 * 301.34562 * 12 11 10 26 26 H 1.09003 * 109.49421 * 58.58900 * 13 12 11 27 27 H 1.09003 * 109.49838 * 178.64982 * 13 12 11 28 28 H 1.09002 * 109.47170 * 302.16094 * 16 14 9 29 29 H 1.08996 * 109.47082 * 62.16160 * 16 14 9 30 30 H 1.09000 * 109.47065 * 301.42503 * 17 16 14 31 31 H 1.08997 * 109.47201 * 61.42164 * 17 16 14 32 32 H 1.00904 * 110.99620 * 179.97438 * 18 17 16 33 33 H 1.00893 * 111.00256 * 303.95027 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 1.2124 6 1 1.8914 2.3964 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0173 -1.2445 -0.3874 9 7 1.4181 -2.3345 0.4929 10 6 0.4389 -2.2527 1.5852 11 6 0.8784 -3.1922 2.7127 12 6 1.0754 -4.6014 2.1494 13 6 2.1742 -4.5778 1.0844 14 6 1.7452 -3.6536 -0.0653 15 1 0.8682 -4.0676 -0.5628 16 6 2.8910 -3.5156 -1.0698 17 6 3.1935 -4.8816 -1.6892 18 7 4.3160 -4.7556 -2.6283 19 1 -0.4850 -0.8358 -0.0848 20 1 0.3929 -1.2299 1.9589 21 1 -0.5431 -2.5524 1.2189 22 1 1.8165 -2.8359 3.1381 23 1 0.1121 -3.2139 3.4875 24 1 1.3643 -5.2771 2.9544 25 1 0.1436 -4.9473 1.7021 26 1 3.1002 -4.2086 1.5252 27 1 2.3307 -5.5860 0.7007 28 1 2.6036 -2.8163 -1.8550 29 1 3.7791 -3.1436 -0.5591 30 1 3.4564 -5.5876 -0.9014 31 1 2.3133 -5.2423 -2.2213 32 1 4.5357 -5.6453 -3.0507 33 1 4.1224 -4.0589 -3.3319 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069720957.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:43 Heat of formation + Delta-G solvation = -1.225582 kcal Electronic energy + Delta-G solvation = -13443.451818 eV Core-core repulsion = 11310.623366 eV Total energy + Delta-G solvation = -2132.828452 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.07321 -34.95006 -33.23094 -31.39201 -29.65851 -26.95487 -24.79198 -22.73599 -21.71200 -20.15160 -19.05663 -16.97898 -15.59747 -15.04269 -14.21968 -14.04056 -13.68943 -13.51453 -13.30401 -13.14210 -12.45631 -12.03738 -11.29782 -11.06543 -10.92683 -10.69727 -10.41591 -10.14943 -10.11605 -10.01808 -9.75854 -9.56002 -9.02463 -8.48805 -8.28866 -6.76831 -5.97298 -3.18390 3.54482 3.56957 3.70954 4.62346 4.79449 5.20395 5.38917 5.55258 5.60668 5.65318 5.70843 5.79906 6.02041 6.07075 6.25017 6.29459 6.38504 6.49045 6.59484 6.65001 6.72206 6.80937 7.02271 7.09944 7.19018 7.29741 7.36704 7.61460 8.15237 8.66444 9.20911 9.93230 10.40438 11.28285 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.014394 C = 0.010188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.257669 B = 1944.721076 C = 2747.777790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.025 4.025 3 Si 1.066 2.934 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.345 4.345 8 H 0.059 0.941 9 N -0.595 5.595 10 C 0.154 3.846 11 C -0.137 4.137 12 C -0.110 4.110 13 C -0.130 4.130 14 C 0.177 3.823 15 H 0.019 0.981 16 C -0.101 4.101 17 C 0.060 3.940 18 N -0.852 5.852 19 H 0.268 0.732 20 H 0.074 0.926 21 H 0.014 0.986 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.019 0.981 32 H 0.333 0.667 33 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.717 -8.672 -0.156 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.227 4.227 3 Si 0.897 3.103 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.474 4.474 8 H 0.077 0.923 9 N -0.319 5.319 10 C 0.028 3.972 11 C -0.177 4.177 12 C -0.147 4.147 13 C -0.169 4.169 14 C 0.070 3.930 15 H 0.036 0.964 16 C -0.140 4.140 17 C -0.071 4.071 18 N -0.381 5.381 19 H 0.079 0.921 20 H 0.092 0.908 21 H 0.032 0.968 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.144 0.856 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.984 -6.770 0.550 7.875 hybrid contribution -0.584 -2.034 -0.795 2.260 sum 3.400 -8.804 -0.245 9.441 Atomic orbital electron populations 1.70708 1.06689 1.30303 1.48109 1.25853 0.96558 1.01509 0.98748 0.83513 0.74510 0.75720 0.76573 1.21768 1.21783 1.22237 1.19986 0.97315 0.88053 1.42061 0.92334 1.44161 1.49936 1.01521 1.36278 1.20895 0.90827 0.98375 0.87142 1.22064 1.00663 0.96090 0.98843 1.21394 0.98622 0.97021 0.97707 1.22151 0.98537 0.98585 0.97601 1.20449 0.94197 0.87190 0.91148 0.96380 1.21557 0.98968 0.94580 0.98853 1.21920 0.90773 0.99131 0.95276 1.58725 1.43393 1.12318 1.23627 0.92092 0.90805 0.96803 0.92480 0.93416 0.93692 0.93076 0.92267 0.93338 0.91455 0.91293 0.91383 0.96284 0.85570 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.76 12.55 55.49 0.70 -27.07 16 2 C -0.02 -0.70 4.67 -17.43 -0.08 -0.78 16 3 Si 1.07 25.71 29.98 -169.99 -5.10 20.61 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.34 -9.57 8.37 -15.06 -0.13 -9.70 16 8 H 0.06 1.64 6.41 -52.48 -0.34 1.30 16 9 N -0.59 -15.00 2.79 -164.52 -0.46 -15.46 16 10 C 0.15 3.68 4.75 -3.71 -0.02 3.67 16 11 C -0.14 -2.70 6.08 -26.61 -0.16 -2.87 16 12 C -0.11 -1.93 5.88 -26.69 -0.16 -2.09 16 13 C -0.13 -2.37 4.96 -26.39 -0.13 -2.50 16 14 C 0.18 3.77 3.00 -67.38 -0.20 3.57 16 15 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 16 C -0.10 -2.01 3.74 -26.73 -0.10 -2.11 16 17 C 0.06 0.94 6.55 -3.82 -0.03 0.92 16 18 N -0.85 -11.90 9.62 -10.37 -0.10 -12.00 16 19 H 0.27 8.21 6.85 -40.82 -0.28 7.93 16 20 H 0.07 1.97 6.57 -51.93 -0.34 1.63 16 21 H 0.01 0.34 7.86 -51.93 -0.41 -0.07 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.77 6.80 -51.93 -0.35 0.42 16 28 H 0.07 1.47 7.52 -51.93 -0.39 1.08 16 29 H 0.07 1.48 7.56 -51.93 -0.39 1.09 16 30 H 0.07 1.03 6.58 -51.93 -0.34 0.69 16 31 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.33 3.74 9.08 -39.29 -0.36 3.38 16 33 H 0.34 4.54 8.99 -39.30 -0.35 4.19 16 LS Contribution 255.46 15.07 3.85 3.85 Total: -1.00 -30.01 255.46 -7.42 -37.43 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.31 Total: 4.54 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -1.00 Total: -11.89 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.14 Total: -54.53 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.10 Total: 20.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.01 -7.42 -37.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069720957.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.201 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds