Wall clock time and date at job start Mon Mar 30 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00185 * 2 1 4 4 H 1.48503 * 109.47490 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47238 * 59.99684 * 3 2 1 6 6 H 1.48503 * 109.46924 * 300.00025 * 3 2 1 7 7 C 1.38815 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00140 * 155.49734 * 7 2 1 9 9 N 1.36936 * 120.00116 * 335.49670 * 7 2 1 10 10 C 1.46922 * 120.63168 * 328.57814 * 9 7 2 11 11 C 1.53199 * 108.77521 * 233.58404 * 10 9 7 12 12 C 1.53037 * 109.31181 * 305.36374 * 11 10 9 13 13 C 1.53041 * 109.53833 * 61.36265 * 12 11 10 14 14 C 1.46928 * 120.63138 * 148.29340 * 9 7 2 15 15 H 1.08995 * 109.58811 * 246.20425 * 14 9 7 16 16 C 1.53000 * 109.58444 * 6.63023 * 14 9 7 17 17 C 1.53006 * 109.47081 * 182.16100 * 16 14 9 18 18 N 1.46896 * 109.46934 * 181.42713 * 17 16 14 19 19 H 0.97005 * 119.99624 * 174.20752 * 1 2 3 20 20 H 1.08998 * 109.58815 * 353.36810 * 10 9 7 21 21 H 1.09003 * 109.58855 * 113.65349 * 10 9 7 22 22 H 1.09002 * 109.49527 * 65.31746 * 11 10 9 23 23 H 1.08997 * 109.49605 * 185.41001 * 11 10 9 24 24 H 1.08997 * 109.46060 * 181.38674 * 12 11 10 25 25 H 1.09000 * 109.45996 * 301.34562 * 12 11 10 26 26 H 1.09003 * 109.49421 * 58.58900 * 13 12 11 27 27 H 1.09003 * 109.49838 * 178.64982 * 13 12 11 28 28 H 1.09002 * 109.47170 * 302.16094 * 16 14 9 29 29 H 1.08996 * 109.47082 * 62.16160 * 16 14 9 30 30 H 1.09000 * 109.47065 * 301.42503 * 17 16 14 31 31 H 1.08997 * 109.47201 * 61.42164 * 17 16 14 32 32 H 1.00904 * 110.99620 * 179.97438 * 18 17 16 33 33 H 1.00893 * 111.00256 * 303.95027 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 1.2124 6 1 1.8914 2.3964 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0173 -1.2445 -0.3874 9 7 1.4181 -2.3345 0.4929 10 6 0.4389 -2.2527 1.5852 11 6 0.8784 -3.1922 2.7127 12 6 1.0754 -4.6014 2.1494 13 6 2.1742 -4.5778 1.0844 14 6 1.7452 -3.6536 -0.0653 15 1 0.8682 -4.0676 -0.5628 16 6 2.8910 -3.5156 -1.0698 17 6 3.1935 -4.8816 -1.6892 18 7 4.3160 -4.7556 -2.6283 19 1 -0.4850 -0.8358 -0.0848 20 1 0.3929 -1.2299 1.9589 21 1 -0.5431 -2.5524 1.2189 22 1 1.8165 -2.8359 3.1381 23 1 0.1121 -3.2139 3.4875 24 1 1.3643 -5.2771 2.9544 25 1 0.1436 -4.9473 1.7021 26 1 3.1002 -4.2086 1.5252 27 1 2.3307 -5.5860 0.7007 28 1 2.6036 -2.8163 -1.8550 29 1 3.7791 -3.1436 -0.5591 30 1 3.4564 -5.5876 -0.9014 31 1 2.3133 -5.2423 -2.2213 32 1 4.5357 -5.6453 -3.0507 33 1 4.1224 -4.0589 -3.3319 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069720957.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:43 Heat of formation + Delta-G solvation = -22.019379 kcal Electronic energy + Delta-G solvation = -13444.353504 eV Core-core repulsion = 11310.623366 eV Total energy + Delta-G solvation = -2133.730139 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79096 -36.36872 -35.13096 -32.95369 -31.56896 -28.51445 -26.77345 -24.27238 -23.45883 -21.75372 -20.81418 -18.95360 -16.91921 -16.73959 -15.86053 -15.68195 -15.42905 -15.14892 -14.95359 -14.79744 -14.05570 -13.63302 -13.10178 -12.79874 -12.61827 -12.44449 -12.06251 -11.90390 -11.86274 -11.65802 -11.57966 -11.18327 -10.88319 -10.42993 -9.62931 -8.86539 -8.17113 -5.38048 1.56884 1.64456 1.80820 2.65682 3.22631 3.41488 3.73230 4.02669 4.07063 4.15897 4.21986 4.33806 4.45052 4.57328 4.63413 4.75627 4.82697 4.92922 5.07267 5.10031 5.15296 5.26368 5.30050 5.37602 5.45723 5.63834 5.95617 6.19663 6.43504 6.61754 7.12477 7.83717 8.29903 9.03729 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.014394 C = 0.010188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.257669 B = 1944.721076 C = 2747.777790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.079 4.079 3 Si 1.114 2.886 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.341 4.341 8 H 0.053 0.947 9 N -0.613 5.613 10 C 0.156 3.844 11 C -0.129 4.129 12 C -0.106 4.106 13 C -0.120 4.120 14 C 0.168 3.832 15 H 0.011 0.989 16 C -0.090 4.090 17 C 0.072 3.928 18 N -0.857 5.857 19 H 0.252 0.748 20 H 0.037 0.963 21 H 0.000 1.000 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.352 0.648 33 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -10.390 0.252 11.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.275 4.275 3 Si 0.939 3.061 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.471 4.471 8 H 0.070 0.930 9 N -0.338 5.338 10 C 0.030 3.970 11 C -0.168 4.168 12 C -0.144 4.144 13 C -0.159 4.159 14 C 0.062 3.938 15 H 0.028 0.972 16 C -0.128 4.128 17 C -0.059 4.059 18 N -0.388 5.388 19 H 0.061 0.939 20 H 0.055 0.945 21 H 0.018 0.982 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.166 0.834 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.139 -8.535 0.953 10.009 hybrid contribution -0.933 -1.558 -0.955 2.052 sum 4.206 -10.093 -0.002 10.934 Atomic orbital electron populations 1.70836 1.07618 1.29230 1.51148 1.27139 0.96644 1.04823 0.98870 0.82870 0.74295 0.72343 0.76566 1.19954 1.21520 1.21883 1.20170 0.96968 0.89207 1.40738 0.92971 1.44452 1.49897 1.02454 1.37043 1.20792 0.90280 0.97551 0.88351 1.21944 1.00827 0.96427 0.97562 1.21402 0.98618 0.95913 0.98460 1.22045 0.98223 0.99233 0.96418 1.20708 0.94370 0.85962 0.92794 0.97161 1.21388 0.97350 0.96550 0.97524 1.21727 0.91789 0.96392 0.95979 1.58658 1.42509 1.13697 1.23896 0.93851 0.94459 0.98205 0.93164 0.91099 0.90160 0.92658 0.93141 0.89975 0.94547 0.93285 0.89924 0.95451 0.83411 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.10 12.55 21.65 0.27 -58.83 16 2 C -0.08 -4.58 4.67 84.86 0.40 -4.18 16 3 Si 1.11 52.64 29.98 68.60 2.06 54.70 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.34 -19.33 8.37 84.03 0.70 -18.63 16 8 H 0.05 2.98 6.41 -2.91 -0.02 2.97 16 9 N -0.61 -31.43 2.79 -674.42 -1.88 -33.31 16 10 C 0.16 7.63 4.75 86.37 0.41 8.04 16 11 C -0.13 -4.87 6.08 30.67 0.19 -4.68 16 12 C -0.11 -3.40 5.88 30.62 0.18 -3.22 16 13 C -0.12 -4.07 4.96 30.82 0.15 -3.92 16 14 C 0.17 7.03 3.00 45.12 0.14 7.17 16 15 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 16 C -0.09 -3.52 3.74 30.60 0.11 -3.40 16 17 C 0.07 2.10 6.55 86.31 0.56 2.67 16 18 N -0.86 -22.03 9.62 -186.72 -1.80 -23.82 16 19 H 0.25 16.10 6.85 -92.70 -0.63 15.47 16 20 H 0.04 2.06 6.57 -2.39 -0.02 2.04 16 21 H 0.00 0.00 7.86 -2.39 -0.02 -0.02 16 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.08 2.25 6.80 -2.39 -0.02 2.24 16 28 H 0.04 1.61 7.52 -2.39 -0.02 1.59 16 29 H 0.05 2.09 7.56 -2.39 -0.02 2.07 16 30 H 0.08 2.19 6.58 -2.39 -0.02 2.18 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.35 6.88 9.08 -89.69 -0.81 6.06 16 33 H 0.34 8.64 8.99 -89.70 -0.81 7.84 16 Total: -1.00 -65.99 255.46 1.10 -64.89 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -0.39 Total: 16.54 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 2.84 Total: -20.17 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -3.41 Total: -115.97 kcal Atomic # 14 Polarization: 52.64 SS G_CDS: 2.06 Total: 54.70 kcal Total: -65.99 1.10 -64.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069720957.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.871 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds