Wall clock time and date at job start Mon Mar 30 2020 02:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48510 * 109.46920 * 239.99963 * 3 2 1 5 5 H 1.48500 * 109.46829 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47464 * 119.99728 * 3 2 1 7 7 C 1.38811 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00185 * 197.35847 * 7 2 1 9 9 N 1.36934 * 120.00270 * 17.36227 * 7 2 1 10 10 C 1.46933 * 120.62825 * 27.68071 * 9 7 2 11 11 C 1.53191 * 108.77600 * 126.39426 * 10 9 7 12 12 C 1.53041 * 109.31495 * 54.63111 * 11 10 9 13 13 C 1.53037 * 109.53626 * 298.63565 * 12 11 10 14 14 H 1.08996 * 109.50162 * 301.40838 * 13 12 11 15 15 C 1.53008 * 109.49232 * 181.31559 * 13 12 11 16 16 C 1.53006 * 109.46653 * 174.99874 * 15 13 12 17 17 N 1.46903 * 109.46843 * 179.97438 * 16 15 13 18 18 C 1.46922 * 120.63525 * 207.67556 * 9 7 2 19 19 H 0.97007 * 119.99736 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.58374 * 6.60094 * 10 9 7 21 21 H 1.09000 * 109.58219 * 246.17548 * 10 9 7 22 22 H 1.09004 * 109.49565 * 294.68327 * 11 10 9 23 23 H 1.08997 * 109.49571 * 174.58737 * 11 10 9 24 24 H 1.09002 * 109.45776 * 178.61605 * 12 11 10 25 25 H 1.08994 * 109.45473 * 58.65599 * 12 11 10 26 26 H 1.08997 * 109.46852 * 294.99769 * 15 13 12 27 27 H 1.08992 * 109.47068 * 55.00684 * 15 13 12 28 28 H 1.08993 * 109.47513 * 300.00049 * 16 15 13 29 29 H 1.09005 * 109.47072 * 60.00497 * 16 15 13 30 30 H 1.00894 * 110.99759 * 56.04549 * 17 16 15 31 31 H 1.00896 * 110.99759 * 180.02562 * 17 16 15 32 32 H 1.09005 * 109.58430 * 113.82049 * 18 9 7 33 33 H 1.09007 * 109.58518 * 353.40479 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2796 9 7 1.3723 -2.3612 -0.3528 10 6 0.2278 -2.3349 -1.2739 11 6 0.5009 -3.3052 -2.4275 12 6 0.8189 -4.6903 -1.8594 13 6 2.0745 -4.6101 -0.9881 14 1 2.9083 -4.2402 -1.5847 15 6 2.4103 -6.0015 -0.4473 16 6 3.7328 -5.9448 0.3200 17 7 4.0549 -7.2805 0.8398 18 6 1.8192 -3.6547 0.1817 19 1 -0.4850 0.8401 -0.0004 20 1 0.0985 -1.3266 -1.6673 21 1 -0.6744 -2.6414 -0.7445 22 1 1.3496 -2.9475 -3.0105 23 1 -0.3798 -3.3675 -3.0667 24 1 0.9895 -5.3884 -2.6789 25 1 -0.0203 -5.0366 -1.2562 26 1 1.6160 -6.3326 0.2217 27 1 2.5017 -6.7016 -1.2775 28 1 4.5270 -5.6135 -0.3489 29 1 3.6414 -5.2445 1.1504 30 1 4.0814 -7.9613 0.0957 31 1 4.9246 -7.2693 1.3513 32 1 1.0467 -4.0688 0.8299 33 1 2.7398 -3.5172 0.7490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069724143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:04 Heat of formation + Delta-G solvation = -0.954055 kcal Electronic energy + Delta-G solvation = -13178.390302 eV Core-core repulsion = 11045.573625 eV Total energy + Delta-G solvation = -2132.816678 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.98311 -35.18735 -33.07330 -30.87145 -30.33539 -26.56951 -25.21576 -22.70848 -21.71566 -20.29415 -18.95111 -16.66868 -15.73873 -14.93344 -14.74321 -14.02594 -13.85437 -13.38067 -13.16221 -12.62364 -12.35252 -12.08977 -11.37685 -11.27839 -10.95443 -10.90840 -10.57163 -10.28790 -10.10454 -10.04960 -9.79562 -9.38442 -9.27974 -8.64486 -8.40601 -6.60007 -5.73439 -3.15147 3.40808 3.46344 3.47706 4.53161 4.63512 5.21733 5.31350 5.43015 5.50090 5.71776 5.75763 5.86036 5.90401 6.08329 6.25911 6.33400 6.46569 6.51682 6.56177 6.71942 6.78486 6.92366 6.98181 7.11981 7.18319 7.45562 7.47381 7.73298 7.83738 8.50849 9.27174 9.91480 10.48799 11.34924 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041662 B = 0.009822 C = 0.008422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.916216 B = 2850.051016 C = 3323.933970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.170 3.830 11 C -0.143 4.143 12 C -0.102 4.102 13 C -0.104 4.104 14 H 0.063 0.937 15 C -0.107 4.107 16 C 0.058 3.942 17 N -0.854 5.854 18 C 0.153 3.847 19 H 0.254 0.746 20 H 0.085 0.915 21 H 0.016 0.984 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.077 0.923 30 H 0.335 0.665 31 H 0.337 0.663 32 H 0.017 0.983 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -9.954 -2.613 11.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.081 0.919 9 N -0.316 5.316 10 C 0.044 3.956 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.125 4.125 14 H 0.082 0.918 15 C -0.146 4.146 16 C -0.072 4.072 17 N -0.382 5.382 18 C 0.027 3.973 19 H 0.064 0.936 20 H 0.103 0.897 21 H 0.034 0.966 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.035 0.965 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.892 -9.702 -2.170 10.677 hybrid contribution 1.270 0.934 -0.642 1.702 sum 5.163 -8.768 -2.812 10.556 Atomic orbital electron populations 1.70038 1.05249 1.25499 1.54011 1.25023 0.95268 0.98340 1.01118 0.86384 0.78923 0.83479 0.78077 1.21116 1.21625 1.20921 1.19148 0.92639 0.85003 1.41320 0.91855 1.44058 1.35847 1.01355 1.50308 1.20779 0.88558 0.98281 0.87986 1.22188 0.99834 0.96360 0.99846 1.21414 0.97422 0.97174 0.97931 1.21649 0.97741 0.94321 0.98762 0.91823 1.21572 0.96861 0.97332 0.98831 1.21905 0.96580 0.90166 0.98550 1.58762 1.40326 1.07945 1.31200 1.20953 0.97301 0.86605 0.92444 0.93645 0.89657 0.96576 0.92939 0.93482 0.93993 0.92844 0.91484 0.93093 0.95824 0.90420 0.85326 0.85112 0.96532 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 11.19 55.49 0.62 -26.20 16 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -7.08 9.58 -15.06 -0.14 -7.23 16 8 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -15.38 3.00 -172.32 -0.52 -15.90 16 10 C 0.17 4.21 5.31 -3.71 -0.02 4.19 16 11 C -0.14 -2.86 6.08 -26.61 -0.16 -3.03 16 12 C -0.10 -1.80 5.17 -26.69 -0.14 -1.94 16 13 C -0.10 -1.86 2.34 -90.50 -0.21 -2.07 16 14 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.11 -1.59 4.95 -26.72 -0.13 -1.72 16 16 C 0.06 0.80 6.55 -3.82 -0.03 0.78 16 17 N -0.85 -9.97 9.62 -10.37 -0.10 -10.07 16 18 C 0.15 3.32 5.41 -3.72 -0.02 3.30 16 19 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 20 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 1.17 6.70 -51.93 -0.35 0.82 16 30 H 0.34 3.36 8.99 -39.29 -0.35 3.01 16 31 H 0.34 3.32 9.08 -39.29 -0.36 2.96 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 1.09 6.65 -51.93 -0.35 0.74 16 LS Contribution 260.09 15.07 3.92 3.92 Total: -1.00 -29.94 260.09 -7.54 -37.48 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.49 Total: 1.51 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.94 Total: -7.78 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.00 Total: -52.16 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.94 -7.54 -37.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069724143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.527 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds