Wall clock time and date at job start Mon Mar 30 2020 02:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48510 * 109.46920 * 239.99963 * 3 2 1 5 5 H 1.48500 * 109.46829 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47464 * 119.99728 * 3 2 1 7 7 C 1.38811 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00185 * 197.35847 * 7 2 1 9 9 N 1.36934 * 120.00270 * 17.36227 * 7 2 1 10 10 C 1.46933 * 120.62825 * 27.68071 * 9 7 2 11 11 C 1.53191 * 108.77600 * 126.39426 * 10 9 7 12 12 C 1.53041 * 109.31495 * 54.63111 * 11 10 9 13 13 C 1.53037 * 109.53626 * 298.63565 * 12 11 10 14 14 H 1.08996 * 109.50162 * 301.40838 * 13 12 11 15 15 C 1.53008 * 109.49232 * 181.31559 * 13 12 11 16 16 C 1.53006 * 109.46653 * 174.99874 * 15 13 12 17 17 N 1.46903 * 109.46843 * 179.97438 * 16 15 13 18 18 C 1.46922 * 120.63525 * 207.67556 * 9 7 2 19 19 H 0.97007 * 119.99736 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.58374 * 6.60094 * 10 9 7 21 21 H 1.09000 * 109.58219 * 246.17548 * 10 9 7 22 22 H 1.09004 * 109.49565 * 294.68327 * 11 10 9 23 23 H 1.08997 * 109.49571 * 174.58737 * 11 10 9 24 24 H 1.09002 * 109.45776 * 178.61605 * 12 11 10 25 25 H 1.08994 * 109.45473 * 58.65599 * 12 11 10 26 26 H 1.08997 * 109.46852 * 294.99769 * 15 13 12 27 27 H 1.08992 * 109.47068 * 55.00684 * 15 13 12 28 28 H 1.08993 * 109.47513 * 300.00049 * 16 15 13 29 29 H 1.09005 * 109.47072 * 60.00497 * 16 15 13 30 30 H 1.00894 * 110.99759 * 56.04549 * 17 16 15 31 31 H 1.00896 * 110.99759 * 180.02562 * 17 16 15 32 32 H 1.09005 * 109.58430 * 113.82049 * 18 9 7 33 33 H 1.09007 * 109.58518 * 353.40479 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2796 9 7 1.3723 -2.3612 -0.3528 10 6 0.2278 -2.3349 -1.2739 11 6 0.5009 -3.3052 -2.4275 12 6 0.8189 -4.6903 -1.8594 13 6 2.0745 -4.6101 -0.9881 14 1 2.9083 -4.2402 -1.5847 15 6 2.4103 -6.0015 -0.4473 16 6 3.7328 -5.9448 0.3200 17 7 4.0549 -7.2805 0.8398 18 6 1.8192 -3.6547 0.1817 19 1 -0.4850 0.8401 -0.0004 20 1 0.0985 -1.3266 -1.6673 21 1 -0.6744 -2.6414 -0.7445 22 1 1.3496 -2.9475 -3.0105 23 1 -0.3798 -3.3675 -3.0667 24 1 0.9895 -5.3884 -2.6789 25 1 -0.0203 -5.0366 -1.2562 26 1 1.6160 -6.3326 0.2217 27 1 2.5017 -6.7016 -1.2775 28 1 4.5270 -5.6135 -0.3489 29 1 3.6414 -5.2445 1.1504 30 1 4.0814 -7.9613 0.0957 31 1 4.9246 -7.2693 1.3513 32 1 1.0467 -4.0688 0.8299 33 1 2.7398 -3.5172 0.7490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069724143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:04 Heat of formation + Delta-G solvation = -21.433361 kcal Electronic energy + Delta-G solvation = -13179.278352 eV Core-core repulsion = 11045.573625 eV Total energy + Delta-G solvation = -2133.704727 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.59851 -36.57469 -34.79276 -32.39666 -32.28275 -27.96754 -27.22568 -24.20365 -23.47245 -21.73016 -20.58861 -18.67142 -17.00460 -16.66610 -16.18379 -15.60941 -15.32325 -15.06605 -14.65478 -14.41867 -13.86987 -13.77980 -13.04922 -12.83504 -12.65835 -12.57239 -12.35140 -12.09206 -11.84591 -11.68890 -11.46612 -11.11540 -10.90517 -10.52725 -9.58232 -8.67860 -7.87707 -5.33291 1.44962 1.47734 1.54748 2.50451 3.25800 3.57214 3.77000 3.97825 4.06444 4.26175 4.37190 4.49648 4.54575 4.66024 4.75617 4.89211 4.91314 5.09311 5.11255 5.16312 5.22966 5.36320 5.42130 5.51162 5.57856 5.66199 5.78693 6.25840 6.38451 6.66503 7.14221 7.86658 8.38719 9.18364 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041662 B = 0.009822 C = 0.008422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.916216 B = 2850.051016 C = 3323.933970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.266 4.266 8 H 0.065 0.935 9 N -0.613 5.613 10 C 0.174 3.826 11 C -0.133 4.133 12 C -0.098 4.098 13 C -0.093 4.093 14 H 0.059 0.941 15 C -0.097 4.097 16 C 0.062 3.938 17 N -0.856 5.856 18 C 0.151 3.849 19 H 0.250 0.750 20 H 0.051 0.949 21 H -0.008 1.008 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.347 0.653 31 H 0.349 0.651 32 H 0.005 0.995 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.873 -11.314 -3.415 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.396 4.396 8 H 0.083 0.917 9 N -0.336 5.336 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.136 4.136 13 C -0.113 4.113 14 H 0.077 0.923 15 C -0.135 4.135 16 C -0.069 4.069 17 N -0.387 5.387 18 C 0.026 3.974 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.010 0.990 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.023 0.977 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.101 -11.103 -2.973 12.575 hybrid contribution 0.894 1.315 -0.345 1.627 sum 5.994 -9.788 -3.318 11.947 Atomic orbital electron populations 1.70201 1.06754 1.25939 1.55375 1.25824 0.96067 1.01601 1.01297 0.85328 0.77593 0.79096 0.78371 1.20372 1.21840 1.20037 1.19501 0.92964 0.86267 1.40872 0.91728 1.44356 1.35947 1.02276 1.51034 1.20624 0.87627 0.97769 0.89192 1.22034 1.00686 0.96482 0.98000 1.21409 0.97109 0.96167 0.98888 1.21483 0.97782 0.95068 0.96980 0.92259 1.21448 0.97056 0.95469 0.99531 1.21753 0.96316 0.90974 0.97835 1.58682 1.41287 1.07045 1.31716 1.21094 0.96552 0.85762 0.94007 0.94077 0.93063 0.98976 0.93227 0.91336 0.90420 0.92979 0.92155 0.90582 0.95341 0.92388 0.83943 0.83841 0.97679 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 11.19 21.65 0.24 -56.93 16 2 C -0.05 -3.04 4.91 84.86 0.42 -2.62 16 3 Si 0.97 45.86 29.59 68.60 2.03 47.89 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.27 -15.20 9.58 84.03 0.81 -14.39 16 8 H 0.07 3.59 7.89 -2.91 -0.02 3.56 16 9 N -0.61 -32.27 3.00 -699.09 -2.09 -34.36 16 10 C 0.17 8.78 5.31 86.36 0.46 9.24 16 11 C -0.13 -5.16 6.08 30.67 0.19 -4.97 16 12 C -0.10 -3.22 5.17 30.62 0.16 -3.06 16 13 C -0.09 -3.13 2.34 -10.72 -0.03 -3.16 16 14 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 15 C -0.10 -2.58 4.95 30.60 0.15 -2.43 16 16 C 0.06 1.57 6.55 86.30 0.57 2.14 16 17 N -0.86 -17.75 9.62 -186.71 -1.80 -19.55 16 18 C 0.15 6.55 5.41 86.36 0.47 7.02 16 19 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 20 H 0.05 2.92 6.04 -2.39 -0.01 2.90 16 21 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 22 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 1.69 6.70 -2.38 -0.02 1.68 16 30 H 0.35 5.83 8.99 -89.70 -0.81 5.03 16 31 H 0.35 6.01 9.08 -89.70 -0.81 5.19 16 32 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 33 H 0.05 2.11 6.65 -2.38 -0.02 2.09 16 Total: -1.00 -64.84 260.09 1.03 -63.81 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -0.53 Total: 11.37 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 3.18 Total: -12.24 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -3.65 Total: -110.84 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -64.84 1.03 -63.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069724143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.380 kcal (2) G-P(sol) polarization free energy of solvation -64.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds