Wall clock time and date at job start Mon Mar 30 2020 02:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48496 * 109.47235 * 274.80964 * 3 2 1 5 5 H 1.48502 * 109.47145 * 34.80776 * 3 2 1 6 6 H 1.48496 * 109.47308 * 154.80381 * 3 2 1 7 7 C 1.38811 * 119.99848 * 179.71907 * 2 1 3 8 8 H 1.07995 * 120.00291 * 339.34088 * 7 2 1 9 9 N 1.36941 * 119.99576 * 159.33436 * 7 2 1 10 10 C 1.46923 * 120.63585 * 333.25185 * 9 7 2 11 11 C 1.52758 * 109.00845 * 233.58671 * 10 9 7 12 12 C 1.53042 * 109.38293 * 305.58059 * 11 10 9 13 13 C 1.53041 * 109.53451 * 61.24232 * 12 11 10 14 14 H 1.09006 * 109.49969 * 58.59153 * 13 12 11 15 15 C 1.53001 * 109.49921 * 178.68308 * 13 12 11 16 16 C 1.52994 * 109.47309 * 184.83949 * 15 13 12 17 17 N 1.46903 * 109.47228 * 179.97438 * 16 15 13 18 18 C 1.46930 * 120.62909 * 153.53109 * 9 7 2 19 19 H 0.97004 * 119.99891 * 0.28047 * 1 2 3 20 20 H 1.09008 * 109.58126 * 353.41653 * 10 9 7 21 21 H 1.08998 * 109.58974 * 113.84156 * 10 9 7 22 22 H 1.09006 * 109.56586 * 185.55203 * 11 10 9 23 23 H 1.08992 * 109.36482 * 65.49371 * 11 10 9 24 24 H 1.08997 * 109.46069 * 301.22706 * 12 11 10 25 25 H 1.09001 * 109.46494 * 181.26055 * 12 11 10 26 26 H 1.09004 * 109.47181 * 304.83891 * 15 13 12 27 27 H 1.09005 * 109.46923 * 64.83696 * 15 13 12 28 28 H 1.08993 * 109.47343 * 299.99837 * 16 15 13 29 29 H 1.09005 * 109.47335 * 60.00000 * 16 15 13 30 30 H 1.00906 * 111.00098 * 180.02562 * 17 16 15 31 31 H 1.00899 * 111.00107 * 303.95671 * 17 16 15 32 32 H 1.09000 * 109.58771 * 246.15796 * 18 9 7 33 33 H 1.09001 * 109.58757 * 6.43638 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3960 2.1051 -1.3951 5 1 1.5021 2.6212 0.7992 6 1 3.5948 1.4130 0.5960 7 6 2.0102 -1.2021 0.0059 8 1 1.5223 -2.1057 0.3403 9 7 3.3135 -1.2423 -0.4125 10 6 3.8207 -0.2575 -1.3777 11 6 4.4629 -0.9957 -2.5508 12 6 5.5248 -1.9627 -2.0223 13 6 4.8660 -2.9937 -1.1030 14 1 4.0965 -3.5340 -1.6546 15 6 5.9228 -3.9797 -0.6012 16 6 5.2457 -5.0794 0.2191 17 7 6.2604 -6.0265 0.7004 18 6 4.2298 -2.2748 0.0907 19 1 -0.4850 0.8401 -0.0041 20 1 2.9962 0.3560 -1.7411 21 1 4.5657 0.3760 -0.8962 22 1 4.9290 -0.2760 -3.2238 23 1 3.6973 -1.5547 -3.0887 24 1 6.2770 -1.4060 -1.4634 25 1 5.9995 -2.4739 -2.8599 26 1 6.4368 -4.4259 -1.4527 27 1 6.6442 -3.4525 0.0231 28 1 4.7318 -4.6333 1.0705 29 1 4.5243 -5.6066 -0.4052 30 1 5.8379 -6.7633 1.2452 31 1 6.7943 -6.4055 -0.0673 32 1 5.0088 -1.8092 0.6945 33 1 3.6757 -2.9905 0.6981 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069724148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:06 Heat of formation + Delta-G solvation = 4.820011 kcal Electronic energy + Delta-G solvation = -13243.699524 eV Core-core repulsion = 11111.133229 eV Total energy + Delta-G solvation = -2132.566295 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.27907 -35.36446 -33.11090 -31.26347 -30.75951 -26.97327 -25.26062 -22.95712 -21.72306 -20.64186 -19.22527 -16.70858 -15.82645 -15.40699 -14.82812 -14.34151 -13.83506 -13.57535 -13.23434 -13.03336 -12.65849 -12.11721 -11.71373 -11.51283 -11.36709 -11.03214 -10.71693 -10.38478 -10.24700 -10.01804 -9.69381 -9.54446 -9.35093 -8.68904 -8.56837 -6.91568 -5.90933 -3.25118 3.35727 3.51627 3.55675 4.56352 4.57634 5.02287 5.11458 5.24476 5.36719 5.49898 5.60484 5.68905 5.78600 5.84895 6.10481 6.15246 6.21341 6.29946 6.36000 6.42667 6.49408 6.69292 6.71119 6.78735 6.82186 7.08154 7.13422 7.41264 8.00900 8.36589 8.99457 9.77269 10.16245 11.25212 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045851 B = 0.010398 C = 0.009193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.532666 B = 2692.239919 C = 3045.058248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.084 0.916 9 N -0.607 5.607 10 C 0.125 3.875 11 C -0.136 4.136 12 C -0.103 4.103 13 C -0.106 4.106 14 H 0.068 0.932 15 C -0.107 4.107 16 C 0.057 3.943 17 N -0.854 5.854 18 C 0.156 3.844 19 H 0.262 0.738 20 H 0.069 0.931 21 H 0.023 0.977 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.025 0.975 30 H 0.338 0.662 31 H 0.335 0.665 32 H 0.022 0.978 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.442 -7.019 -2.866 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.714 3.286 4 H -0.218 1.218 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.102 0.898 9 N -0.331 5.331 10 C 0.000 4.000 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.126 4.126 14 H 0.087 0.913 15 C -0.146 4.146 16 C -0.073 4.073 17 N -0.382 5.382 18 C 0.030 3.970 19 H 0.071 0.929 20 H 0.087 0.913 21 H 0.041 0.959 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.043 0.957 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.040 0.960 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.562 -6.292 -2.432 13.386 hybrid contribution -0.156 0.285 -0.644 0.721 sum 11.406 -6.007 -3.076 13.253 Atomic orbital electron populations 1.69843 1.05725 1.26460 1.53386 1.25246 0.95220 0.97592 0.99694 0.86919 0.80146 0.84643 0.76857 1.21784 1.23232 1.19489 1.18932 0.85058 0.94805 1.39778 0.89793 1.44357 1.08845 1.32620 1.47248 1.21235 0.97074 0.92071 0.89645 1.21943 0.98217 0.98594 0.98750 1.21420 0.97550 0.96947 0.98119 1.21646 0.96896 0.95617 0.98472 0.91306 1.21562 0.98257 0.96052 0.98713 1.21906 0.92850 0.93631 0.98913 1.58776 1.28912 1.22238 1.28319 1.20982 0.92297 0.90887 0.92851 0.92854 0.91270 0.95866 0.92954 0.91907 0.92697 0.93307 0.92903 0.91453 0.90360 0.95659 0.85011 0.85321 0.96037 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.97 55.49 0.78 -27.65 16 2 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 3 Si 0.88 22.98 24.35 -169.99 -4.14 18.84 16 4 H -0.29 -7.29 6.70 56.52 0.38 -6.91 16 5 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 6 H -0.27 -6.91 6.49 56.52 0.37 -6.55 16 7 C -0.26 -7.37 10.04 -15.06 -0.15 -7.52 16 8 H 0.08 2.55 8.05 -52.49 -0.42 2.12 16 9 N -0.61 -14.89 2.78 -172.58 -0.48 -15.37 16 10 C 0.13 2.83 4.17 -3.94 -0.02 2.82 16 11 C -0.14 -2.50 6.06 -26.83 -0.16 -2.66 16 12 C -0.10 -1.65 5.17 -26.69 -0.14 -1.79 16 13 C -0.11 -1.76 2.34 -90.50 -0.21 -1.97 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.11 -1.47 4.95 -26.73 -0.13 -1.60 16 16 C 0.06 0.75 6.55 -3.83 -0.03 0.72 16 17 N -0.85 -9.51 9.62 -10.37 -0.10 -9.61 16 18 C 0.16 3.15 5.41 -3.71 -0.02 3.13 16 19 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 20 H 0.07 1.71 4.48 -51.92 -0.23 1.48 16 21 H 0.02 0.53 7.01 -51.93 -0.36 0.16 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.13 6.70 -51.93 -0.35 0.78 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.34 3.19 9.08 -39.29 -0.36 2.84 16 31 H 0.34 3.19 8.99 -39.29 -0.35 2.83 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.23 6.65 -51.93 -0.35 0.89 16 LS Contribution 253.49 15.07 3.82 3.82 Total: -1.00 -30.98 253.49 -6.49 -37.47 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.42 Total: 0.84 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.95 Total: -8.35 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.19 Total: -52.63 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.14 Total: 18.84 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.98 -6.49 -37.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069724148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.294 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds