Wall clock time and date at job start Mon Mar 30 2020 02:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48496 * 109.47235 * 274.80964 * 3 2 1 5 5 H 1.48502 * 109.47145 * 34.80776 * 3 2 1 6 6 H 1.48496 * 109.47308 * 154.80381 * 3 2 1 7 7 C 1.38811 * 119.99848 * 179.71907 * 2 1 3 8 8 H 1.07995 * 120.00291 * 339.34088 * 7 2 1 9 9 N 1.36941 * 119.99576 * 159.33436 * 7 2 1 10 10 C 1.46923 * 120.63585 * 333.25185 * 9 7 2 11 11 C 1.52758 * 109.00845 * 233.58671 * 10 9 7 12 12 C 1.53042 * 109.38293 * 305.58059 * 11 10 9 13 13 C 1.53041 * 109.53451 * 61.24232 * 12 11 10 14 14 H 1.09006 * 109.49969 * 58.59153 * 13 12 11 15 15 C 1.53001 * 109.49921 * 178.68308 * 13 12 11 16 16 C 1.52994 * 109.47309 * 184.83949 * 15 13 12 17 17 N 1.46903 * 109.47228 * 179.97438 * 16 15 13 18 18 C 1.46930 * 120.62909 * 153.53109 * 9 7 2 19 19 H 0.97004 * 119.99891 * 0.28047 * 1 2 3 20 20 H 1.09008 * 109.58126 * 353.41653 * 10 9 7 21 21 H 1.08998 * 109.58974 * 113.84156 * 10 9 7 22 22 H 1.09006 * 109.56586 * 185.55203 * 11 10 9 23 23 H 1.08992 * 109.36482 * 65.49371 * 11 10 9 24 24 H 1.08997 * 109.46069 * 301.22706 * 12 11 10 25 25 H 1.09001 * 109.46494 * 181.26055 * 12 11 10 26 26 H 1.09004 * 109.47181 * 304.83891 * 15 13 12 27 27 H 1.09005 * 109.46923 * 64.83696 * 15 13 12 28 28 H 1.08993 * 109.47343 * 299.99837 * 16 15 13 29 29 H 1.09005 * 109.47335 * 60.00000 * 16 15 13 30 30 H 1.00906 * 111.00098 * 180.02562 * 17 16 15 31 31 H 1.00899 * 111.00107 * 303.95671 * 17 16 15 32 32 H 1.09000 * 109.58771 * 246.15796 * 18 9 7 33 33 H 1.09001 * 109.58757 * 6.43638 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3960 2.1051 -1.3951 5 1 1.5021 2.6212 0.7992 6 1 3.5948 1.4130 0.5960 7 6 2.0102 -1.2021 0.0059 8 1 1.5223 -2.1057 0.3403 9 7 3.3135 -1.2423 -0.4125 10 6 3.8207 -0.2575 -1.3777 11 6 4.4629 -0.9957 -2.5508 12 6 5.5248 -1.9627 -2.0223 13 6 4.8660 -2.9937 -1.1030 14 1 4.0965 -3.5340 -1.6546 15 6 5.9228 -3.9797 -0.6012 16 6 5.2457 -5.0794 0.2191 17 7 6.2604 -6.0265 0.7004 18 6 4.2298 -2.2748 0.0907 19 1 -0.4850 0.8401 -0.0041 20 1 2.9962 0.3560 -1.7411 21 1 4.5657 0.3760 -0.8962 22 1 4.9290 -0.2760 -3.2238 23 1 3.6973 -1.5547 -3.0887 24 1 6.2770 -1.4060 -1.4634 25 1 5.9995 -2.4739 -2.8599 26 1 6.4368 -4.4259 -1.4527 27 1 6.6442 -3.4525 0.0231 28 1 4.7318 -4.6333 1.0705 29 1 4.5243 -5.6066 -0.4052 30 1 5.8379 -6.7633 1.2452 31 1 6.7943 -6.4055 -0.0673 32 1 5.0088 -1.8092 0.6945 33 1 3.6757 -2.9905 0.6981 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069724148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:05 Heat of formation + Delta-G solvation = -18.064118 kcal Electronic energy + Delta-G solvation = -13244.691854 eV Core-core repulsion = 11111.133229 eV Total energy + Delta-G solvation = -2133.558626 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.80938 -36.67397 -34.82632 -32.95255 -32.45466 -28.28807 -27.17817 -24.32149 -23.53836 -21.94047 -20.71281 -18.74821 -17.33101 -16.88592 -16.15213 -15.77372 -15.45077 -15.05275 -14.87026 -14.61951 -14.22349 -13.76384 -13.36261 -13.22239 -12.78392 -12.47440 -12.44651 -11.99491 -11.81689 -11.56439 -11.53885 -11.24743 -10.97893 -10.66038 -9.59665 -8.92917 -8.18174 -5.48492 1.27934 1.39378 1.49110 2.40297 3.04211 3.34890 3.61545 3.93751 4.03392 4.10110 4.27484 4.40990 4.47207 4.55314 4.66774 4.73785 4.75847 4.97261 5.01384 5.09542 5.11439 5.17725 5.29456 5.36585 5.40957 5.65151 5.84930 6.10773 6.24501 6.64753 6.91487 7.62534 8.03408 9.01903 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045851 B = 0.010398 C = 0.009193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.532666 B = 2692.239919 C = 3045.058248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.038 4.038 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.310 1.310 6 H -0.262 1.262 7 C -0.249 4.249 8 H 0.050 0.950 9 N -0.623 5.623 10 C 0.117 3.883 11 C -0.131 4.131 12 C -0.099 4.099 13 C -0.096 4.096 14 H 0.054 0.946 15 C -0.096 4.096 16 C 0.059 3.941 17 N -0.855 5.855 18 C 0.151 3.849 19 H 0.262 0.738 20 H 0.045 0.955 21 H 0.031 0.969 22 H 0.082 0.918 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.024 0.976 30 H 0.348 0.652 31 H 0.347 0.653 32 H 0.028 0.972 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.285 -7.152 -3.858 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.232 4.232 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.239 1.239 6 H -0.186 1.186 7 C -0.379 4.379 8 H 0.068 0.932 9 N -0.347 5.347 10 C -0.008 4.008 11 C -0.170 4.170 12 C -0.136 4.136 13 C -0.117 4.117 14 H 0.073 0.927 15 C -0.134 4.134 16 C -0.071 4.071 17 N -0.386 5.386 18 C 0.027 3.973 19 H 0.070 0.930 20 H 0.063 0.937 21 H 0.049 0.951 22 H 0.100 0.900 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.046 0.954 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.461 -6.451 -3.438 16.203 hybrid contribution -1.042 0.216 -0.313 1.110 sum 13.418 -6.235 -3.751 15.264 Atomic orbital electron populations 1.69970 1.07390 1.27195 1.55944 1.25890 0.95869 1.01008 1.00448 0.85853 0.78783 0.80128 0.77395 1.20225 1.23866 1.18621 1.18889 0.86923 0.93606 1.38447 0.93239 1.44519 1.07990 1.34021 1.48193 1.21335 0.96538 0.92084 0.90822 1.21874 0.98555 0.99291 0.97230 1.21430 0.96842 0.96347 0.99019 1.21505 0.97303 0.96080 0.96799 0.92705 1.21442 0.97121 0.95335 0.99509 1.21780 0.93228 0.94032 0.98109 1.58714 1.28397 1.22598 1.28874 1.21163 0.91653 0.89953 0.94574 0.92958 0.93726 0.95089 0.89993 0.93137 0.91752 0.90061 0.90511 0.91451 0.92332 0.95809 0.83927 0.83958 0.95395 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.73 13.97 21.65 0.30 -61.43 16 2 C -0.04 -2.27 5.23 84.86 0.44 -1.83 16 3 Si 0.95 48.02 24.35 68.60 1.67 49.69 16 4 H -0.28 -13.16 6.70 99.48 0.67 -12.49 16 5 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 6 H -0.26 -12.72 6.49 99.48 0.65 -12.07 16 7 C -0.25 -14.64 10.04 84.03 0.84 -13.80 16 8 H 0.05 3.17 8.05 -2.91 -0.02 3.15 16 9 N -0.62 -30.38 2.78 -699.93 -1.95 -32.33 16 10 C 0.12 5.09 4.17 86.22 0.36 5.45 16 11 C -0.13 -4.41 6.06 30.53 0.19 -4.23 16 12 C -0.10 -2.79 5.17 30.62 0.16 -2.63 16 13 C -0.10 -2.99 2.34 -10.72 -0.03 -3.01 16 14 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 15 C -0.10 -2.32 4.95 30.59 0.15 -2.17 16 16 C 0.06 1.45 6.55 86.30 0.56 2.01 16 17 N -0.86 -16.98 9.62 -186.72 -1.80 -18.78 16 18 C 0.15 6.01 5.41 86.36 0.47 6.48 16 19 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 20 H 0.04 2.15 4.48 -2.38 -0.01 2.14 16 21 H 0.03 1.31 7.01 -2.39 -0.02 1.29 16 22 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.06 1.65 6.70 -2.39 -0.02 1.64 16 29 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.35 5.87 9.08 -89.69 -0.81 5.06 16 31 H 0.35 5.53 8.99 -89.69 -0.81 4.73 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 2.04 6.65 -2.39 -0.02 2.02 16 Total: -1.00 -67.49 253.49 0.75 -66.75 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -0.63 Total: 9.83 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 3.15 Total: -13.74 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -3.44 Total: -112.54 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.67 Total: 49.69 kcal Total: -67.49 0.75 -66.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069724148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.685 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds