Wall clock time and date at job start Mon Mar 30 2020 02:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 11 11 C 1.53189 * 108.89061 * 126.29441 * 10 9 7 12 12 C 1.53349 * 109.15350 * 54.57922 * 11 10 9 13 13 C 1.52989 * 109.42090 * 178.67324 * 12 11 10 14 14 C 1.53000 * 109.47021 * 295.12340 * 13 12 11 15 15 N 1.46905 * 109.47067 * 180.02562 * 14 13 12 16 16 C 1.53047 * 109.60312 * 298.71070 * 12 11 10 17 17 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 18 18 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.58339 * 246.15009 * 10 9 7 20 20 H 1.09003 * 109.58852 * 6.43598 * 10 9 7 21 21 H 1.09001 * 109.49505 * 174.65848 * 11 10 9 22 22 H 1.08994 * 109.50061 * 294.75020 * 11 10 9 23 23 H 1.08997 * 109.42274 * 58.74421 * 12 11 10 24 24 H 1.09000 * 109.47734 * 55.12337 * 13 12 11 25 25 H 1.09008 * 109.47484 * 175.12574 * 13 12 11 26 26 H 1.08995 * 109.47125 * 299.99647 * 14 13 12 27 27 H 1.08999 * 109.47135 * 60.00564 * 14 13 12 28 28 H 1.00907 * 111.00028 * 180.02562 * 15 14 13 29 29 H 1.00907 * 110.99912 * 303.95568 * 15 14 13 30 30 H 1.09000 * 109.49464 * 301.42009 * 16 12 11 31 31 H 1.08999 * 109.52117 * 181.33762 * 16 12 11 32 32 H 1.09002 * 109.58255 * 353.42549 * 17 9 7 33 33 H 1.09000 * 109.58150 * 113.70283 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8140 -3.6530 -0.1978 11 6 2.0709 -4.6185 0.9634 12 6 0.8133 -4.7005 1.8372 13 6 1.0518 -5.6888 2.9804 14 6 1.2431 -7.0946 2.4077 15 7 1.4715 -8.0436 3.5056 16 6 0.4986 -3.3187 2.4150 17 6 0.2264 -2.3400 1.2683 18 1 -0.4849 0.8400 0.0004 19 1 1.0401 -4.0610 -0.8480 20 1 2.7331 -3.5130 -0.7669 21 1 2.3090 -5.6064 0.5691 22 1 2.9059 -4.2542 1.5616 23 1 -0.0269 -5.0410 1.2321 24 1 1.9450 -5.3969 3.5328 25 1 0.1922 -5.6834 3.6507 26 1 0.3499 -7.3866 1.8555 27 1 2.1027 -7.1001 1.7376 28 1 1.6013 -8.9801 3.1529 29 1 2.2564 -7.7590 4.0722 30 1 1.3485 -2.9667 2.9997 31 1 -0.3815 -3.3832 3.0548 32 1 0.0994 -1.3342 1.6687 33 1 -0.6773 -2.6386 0.7370 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069729930.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:05 Heat of formation + Delta-G solvation = -0.931052 kcal Electronic energy + Delta-G solvation = -13104.172569 eV Core-core repulsion = 10971.356889 eV Total energy + Delta-G solvation = -2132.815680 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.01606 -35.30854 -33.04467 -30.91031 -29.77411 -27.70345 -24.56778 -22.70511 -21.74221 -20.40070 -19.01950 -16.69529 -15.75242 -15.03072 -14.74753 -14.20273 -13.54485 -13.44523 -13.20207 -12.72127 -12.52590 -11.98883 -11.38490 -11.25649 -11.07302 -10.75336 -10.65232 -10.36563 -10.10952 -10.05540 -9.80861 -9.39047 -9.30279 -8.67826 -8.42083 -6.60191 -5.73997 -3.16280 3.39360 3.46983 3.49451 4.53472 4.56368 5.14567 5.24953 5.40860 5.48738 5.60330 5.70522 5.84707 5.91868 6.14804 6.18359 6.28321 6.39436 6.47604 6.62249 6.72438 6.80193 6.91560 6.95444 7.07426 7.10034 7.37113 7.46351 7.73396 7.84135 8.50744 9.26950 9.90917 10.48382 11.34398 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.075576 B = 0.007924 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.397329 B = 3532.647745 C = 3629.920618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.145 3.855 11 C -0.128 4.128 12 C -0.078 4.078 13 C -0.111 4.111 14 C 0.058 3.942 15 N -0.855 5.855 16 C -0.134 4.134 17 C 0.170 3.830 18 H 0.252 0.748 19 H 0.015 0.985 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.336 0.664 29 H 0.338 0.662 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -10.850 4.507 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.018 3.982 11 C -0.167 4.167 12 C -0.097 4.097 13 C -0.149 4.149 14 C -0.072 4.072 15 N -0.384 5.384 16 C -0.173 4.173 17 C 0.045 3.955 18 H 0.063 0.937 19 H 0.033 0.967 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 1.888 -10.484 4.724 11.653 hybrid contribution 1.313 0.695 -0.468 1.558 sum 3.201 -9.789 4.256 11.144 Atomic orbital electron populations 1.70049 1.05269 1.25286 1.54235 1.25044 0.95276 0.98371 1.01092 0.86242 0.79356 0.84055 0.77258 1.20297 1.21749 1.21578 1.19238 0.92511 0.84925 1.41300 0.91787 1.44063 1.35964 1.01486 1.50107 1.20895 0.97314 0.87084 0.92891 1.22154 0.97284 0.98536 0.98736 1.21069 0.98029 0.95139 0.95478 1.21655 1.01691 0.93144 0.98437 1.21911 1.00203 0.92765 0.92303 1.58780 1.49178 1.05500 1.24910 1.22207 0.99889 0.95521 0.99723 1.20768 0.88544 0.98174 0.88061 0.93748 0.96707 0.93147 0.93384 0.92654 0.92032 0.92646 0.91787 0.91335 0.95229 0.85211 0.85029 0.92899 0.93443 0.89665 0.96577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 11.20 55.49 0.62 -26.20 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.25 -7.05 9.58 -15.06 -0.14 -7.19 16 8 H 0.06 1.77 7.89 -52.48 -0.41 1.36 16 9 N -0.59 -15.36 2.99 -172.32 -0.52 -15.88 16 10 C 0.14 3.14 6.50 -3.71 -0.02 3.11 16 11 C -0.13 -2.28 5.16 -26.45 -0.14 -2.41 16 12 C -0.08 -1.34 2.15 -90.42 -0.19 -1.54 16 13 C -0.11 -1.60 4.94 -26.74 -0.13 -1.73 16 14 C 0.06 0.73 6.54 -3.82 -0.03 0.71 16 15 N -0.85 -9.32 9.62 -10.37 -0.10 -9.42 16 16 C -0.13 -2.66 5.36 -26.61 -0.14 -2.80 16 17 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 18 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 19 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 20 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 21 H 0.05 0.74 6.52 -51.93 -0.34 0.40 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.03 0.37 6.53 -51.93 -0.34 0.03 16 28 H 0.34 2.99 9.08 -39.29 -0.36 2.63 16 29 H 0.34 3.31 8.99 -39.29 -0.35 2.96 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 259.79 15.07 3.91 3.91 Total: -1.00 -29.97 259.79 -7.48 -37.45 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.47 Total: 0.88 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.90 Total: -7.75 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.01 Total: -51.50 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.97 -7.48 -37.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069729930.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.517 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds