Wall clock time and date at job start Mon Mar 30 2020 02:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53005 * 109.47264 * 295.00560 * 3 2 1 6 6 C 1.53002 * 109.47060 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47013 * 59.99689 * 6 5 3 8 8 C 1.52992 * 109.47464 * 299.99820 * 7 6 5 9 9 H 1.09007 * 109.47262 * 300.00287 * 8 7 6 10 10 O 1.42896 * 109.47577 * 180.02562 * 8 7 6 11 11 C 1.34925 * 117.00190 * 89.99869 * 10 8 7 12 12 H 1.08000 * 119.99777 * 0.02562 * 11 10 8 13 13 C 1.38638 * 120.00360 * 180.02562 * 11 10 8 14 14 N 1.31576 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99973 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47749 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47295 * 120.00037 * 15 13 11 18 18 H 1.48504 * 109.47041 * 239.99678 * 15 13 11 19 19 C 1.52999 * 109.47367 * 60.00012 * 8 7 6 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 24 24 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 25 25 H 1.08997 * 109.46584 * 299.99168 * 5 3 2 26 26 H 1.08999 * 109.47123 * 59.99430 * 5 3 2 27 27 H 1.08997 * 109.47011 * 299.99778 * 6 5 3 28 28 H 1.09005 * 109.46847 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.46690 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47159 * 60.00180 * 7 6 5 31 31 H 0.97004 * 120.00190 * 180.02562 * 14 13 11 32 32 H 1.08993 * 109.47768 * 180.02562 * 19 8 7 33 33 H 1.09007 * 109.46705 * 59.99934 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1447 3.5693 -1.3070 7 6 3.6695 3.5716 -1.1810 8 6 4.0743 2.8876 0.1262 9 1 3.6394 3.4263 0.9681 10 8 5.4984 2.8902 0.2442 11 6 6.0598 3.9493 0.8635 12 1 5.4366 4.7451 1.2439 13 6 7.4366 4.0160 1.0117 14 7 8.1958 3.0462 0.5488 15 14 8.2137 5.4820 1.8698 16 1 7.1505 6.4274 2.2953 17 1 8.9677 5.0158 3.0611 18 1 9.1408 6.1686 0.9348 19 6 3.5648 1.4449 0.1260 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 2.0698 1.5876 -2.1491 26 1 0.5489 2.1253 -1.3968 27 1 1.7098 4.1080 -0.4652 28 1 1.8566 4.0565 -2.2386 29 1 4.0325 4.5994 -1.1812 30 1 4.1044 3.0329 -2.0228 31 1 9.1592 3.0927 0.6528 32 1 3.8528 0.9576 1.0575 33 1 3.9998 0.9061 -0.7159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070564458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:09 Heat of formation + Delta-G solvation = -72.704895 kcal Electronic energy + Delta-G solvation = -13020.661994 eV Core-core repulsion = 10852.441216 eV Total energy + Delta-G solvation = -2168.220779 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.61589 -35.77890 -33.12632 -31.56007 -29.56406 -28.12747 -24.49952 -23.32101 -21.76776 -20.11071 -19.31788 -17.39166 -15.51373 -14.70229 -14.55855 -14.02618 -13.76686 -13.46854 -13.27264 -12.71280 -12.28567 -12.01100 -11.70560 -11.27652 -11.12483 -10.94144 -10.85860 -10.58252 -10.51138 -10.25055 -10.16379 -10.06451 -9.54478 -9.22841 -8.93831 -7.89316 -5.88909 -3.51264 3.33679 3.36954 3.41337 4.34778 4.92093 5.01018 5.14381 5.33859 5.43540 5.49811 5.55550 5.68048 5.82231 5.90836 5.97769 6.00640 6.07213 6.16336 6.18288 6.21650 6.31911 6.40932 6.44083 6.58930 6.76060 6.78068 6.95387 7.08626 7.15447 7.53809 8.49687 9.54968 10.26657 11.32551 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.061592 B = 0.007881 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.496680 B = 3551.867472 C = 3748.422267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.066 0.934 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.138 4.138 8 C 0.100 3.900 9 H 0.035 0.965 10 O -0.289 6.289 11 C -0.354 4.354 12 H 0.061 0.939 13 C 0.020 3.980 14 N -0.891 5.891 15 Si 0.922 3.078 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.107 4.107 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.256 0.744 32 H 0.061 0.939 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.368 -2.392 -1.888 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.084 0.916 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.176 4.176 8 C 0.041 3.959 9 H 0.053 0.947 10 O -0.204 6.204 11 C -0.433 4.433 12 H 0.079 0.921 13 C -0.178 4.178 14 N -0.534 5.534 15 Si 0.749 3.251 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.145 4.145 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.090 -2.583 -1.967 13.486 hybrid contribution 0.323 0.973 0.484 1.134 sum -12.767 -1.610 -1.483 12.953 Atomic orbital electron populations 1.21821 0.96373 1.01010 1.01707 1.21560 0.95284 0.96839 1.01983 1.21147 0.95988 0.95285 0.97849 0.91589 1.21626 0.99605 0.96102 0.97647 1.21516 0.96809 0.96272 1.00801 1.22077 0.93828 1.01487 1.00204 1.21694 0.85856 0.93799 0.94591 0.94680 1.85670 1.14096 1.43283 1.77339 1.20919 0.90489 0.98286 1.33651 0.92102 1.24936 0.95413 0.98174 0.99256 1.70031 1.04082 1.31903 1.47423 0.85937 0.79279 0.80992 0.78848 1.19996 1.20946 1.20956 1.21581 0.93142 0.97535 1.02254 0.92970 0.93256 0.92640 0.92056 0.92084 0.92161 0.92504 0.92578 0.92735 0.92156 0.92100 0.93390 0.91980 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.67 37.16 0.36 -1.23 16 2 C -0.12 -1.49 5.40 -26.73 -0.14 -1.64 16 3 C -0.08 -1.24 2.19 -90.62 -0.20 -1.44 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.11 -1.55 4.96 -26.73 -0.13 -1.69 16 6 C -0.12 -1.78 5.92 -26.73 -0.16 -1.94 16 7 C -0.14 -2.72 5.54 -26.74 -0.15 -2.87 16 8 C 0.10 2.25 2.65 -26.74 -0.07 2.18 16 9 H 0.04 0.79 7.80 -51.93 -0.40 0.39 16 10 O -0.29 -8.45 9.43 -16.49 -0.16 -8.61 16 11 C -0.35 -10.61 9.77 30.88 0.30 -10.31 16 12 H 0.06 1.73 7.64 -52.49 -0.40 1.33 16 13 C 0.02 0.60 5.49 -17.51 -0.10 0.50 16 14 N -0.89 -28.54 13.67 55.48 0.76 -27.78 16 15 Si 0.92 22.51 29.55 -169.99 -5.02 17.49 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C -0.11 -2.04 4.86 -26.73 -0.13 -2.17 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 265.02 15.07 3.99 3.99 Total: -1.00 -32.48 265.02 -6.54 -39.02 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.70 Total: -3.53 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -0.42 Total: -20.59 kcal Atomic # 7 Polarization: -28.54 SS G_CDS: 0.76 Total: -27.78 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.16 Total: -8.61 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.48 -6.54 -39.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070564458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.684 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds