Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53005 * 109.47264 * 295.00560 * 3 2 1 6 6 C 1.53002 * 109.47060 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47013 * 59.99689 * 6 5 3 8 8 C 1.52992 * 109.47464 * 299.99820 * 7 6 5 9 9 H 1.09007 * 109.47262 * 300.00287 * 8 7 6 10 10 O 1.42896 * 109.47577 * 180.02562 * 8 7 6 11 11 C 1.34925 * 117.00190 * 89.99869 * 10 8 7 12 12 H 1.08000 * 119.99777 * 0.02562 * 11 10 8 13 13 C 1.38638 * 120.00360 * 180.02562 * 11 10 8 14 14 N 1.31576 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99973 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47749 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47295 * 120.00037 * 15 13 11 18 18 H 1.48504 * 109.47041 * 239.99678 * 15 13 11 19 19 C 1.52999 * 109.47367 * 60.00012 * 8 7 6 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 24 24 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 25 25 H 1.08997 * 109.46584 * 299.99168 * 5 3 2 26 26 H 1.08999 * 109.47123 * 59.99430 * 5 3 2 27 27 H 1.08997 * 109.47011 * 299.99778 * 6 5 3 28 28 H 1.09005 * 109.46847 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.46690 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47159 * 60.00180 * 7 6 5 31 31 H 0.97004 * 120.00190 * 180.02562 * 14 13 11 32 32 H 1.08993 * 109.47768 * 180.02562 * 19 8 7 33 33 H 1.09007 * 109.46705 * 59.99934 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1447 3.5693 -1.3070 7 6 3.6695 3.5716 -1.1810 8 6 4.0743 2.8876 0.1262 9 1 3.6394 3.4263 0.9681 10 8 5.4984 2.8902 0.2442 11 6 6.0598 3.9493 0.8635 12 1 5.4366 4.7451 1.2439 13 6 7.4366 4.0160 1.0117 14 7 8.1958 3.0462 0.5488 15 14 8.2137 5.4820 1.8698 16 1 7.1505 6.4274 2.2953 17 1 8.9677 5.0158 3.0611 18 1 9.1408 6.1686 0.9348 19 6 3.5648 1.4449 0.1260 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 2.0698 1.5876 -2.1491 26 1 0.5489 2.1253 -1.3968 27 1 1.7098 4.1080 -0.4652 28 1 1.8566 4.0565 -2.2386 29 1 4.0325 4.5994 -1.1812 30 1 4.1044 3.0329 -2.0228 31 1 9.1592 3.0927 0.6528 32 1 3.8528 0.9576 1.0575 33 1 3.9998 0.9061 -0.7159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070564458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = -92.760313 kcal Electronic energy + Delta-G solvation = -13021.531663 eV Core-core repulsion = 10852.441216 eV Total energy + Delta-G solvation = -2169.090447 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.11725 -37.62710 -34.52998 -33.64257 -31.04393 -29.46934 -26.70098 -24.53373 -23.19623 -21.48205 -20.78053 -19.53370 -17.45738 -16.24793 -15.91336 -15.75184 -15.21227 -15.03840 -14.50268 -14.14744 -14.01177 -13.45676 -13.16170 -13.09339 -12.68523 -12.30309 -12.24966 -12.15096 -12.02427 -11.84417 -11.48434 -11.44676 -11.12400 -11.03023 -10.77523 -10.07539 -8.17433 -5.85798 1.37565 1.43573 1.54192 2.32435 3.15137 3.52265 3.80854 3.90107 4.18917 4.22745 4.35371 4.38192 4.52365 4.57403 4.63322 4.75445 4.76479 4.83013 5.05373 5.06255 5.14335 5.17739 5.21862 5.25474 5.28545 5.37953 5.43049 5.50615 5.57072 5.63769 6.22266 7.25799 8.10349 9.08204 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.061592 B = 0.007881 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.496680 B = 3551.867472 C = 3748.422267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.077 4.077 4 H 0.070 0.930 5 C -0.109 4.109 6 C -0.109 4.109 7 C -0.132 4.132 8 C 0.087 3.913 9 H 0.030 0.970 10 O -0.334 6.334 11 C -0.369 4.369 12 H 0.068 0.932 13 C -0.047 4.047 14 N -0.943 5.943 15 Si 1.004 2.996 16 H -0.258 1.258 17 H -0.275 1.275 18 H -0.275 1.275 19 C -0.102 4.102 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.260 0.740 32 H 0.046 0.954 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.284 -1.635 -1.798 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.095 4.095 4 H 0.088 0.912 5 C -0.146 4.146 6 C -0.146 4.146 7 C -0.170 4.170 8 C 0.029 3.971 9 H 0.048 0.952 10 O -0.250 6.250 11 C -0.448 4.448 12 H 0.086 0.914 13 C -0.239 4.239 14 N -0.588 5.588 15 Si 0.826 3.174 16 H -0.182 1.182 17 H -0.200 1.200 18 H -0.201 1.201 19 C -0.140 4.140 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.045 -1.829 -1.881 15.272 hybrid contribution 0.880 0.688 0.436 1.199 sum -14.165 -1.141 -1.445 14.284 Atomic orbital electron populations 1.21786 0.94133 1.02158 1.02356 1.21533 0.97141 0.94923 1.01876 1.21120 0.92228 0.97324 0.98851 0.91183 1.21635 1.01587 0.94609 0.96744 1.21491 0.92772 0.97939 1.02400 1.21978 0.97545 0.99554 0.97939 1.22100 0.82848 0.96354 0.95812 0.95176 1.85597 1.17976 1.43754 1.77683 1.21377 0.91240 0.98631 1.33536 0.91426 1.26225 0.95819 1.01794 1.00057 1.70206 1.04573 1.34694 1.49337 0.84714 0.78329 0.76755 0.77570 1.18172 1.20038 1.20072 1.21575 0.96603 0.94848 1.00935 0.92600 0.91975 0.91656 0.92547 0.92010 0.92200 0.89125 0.91779 0.90363 0.94067 0.93348 0.93149 0.93531 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.67 71.98 0.70 -1.87 16 2 C -0.12 -2.69 5.40 30.59 0.17 -2.53 16 3 C -0.08 -2.14 2.19 -10.79 -0.02 -2.16 16 4 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 5 C -0.11 -2.68 4.96 30.60 0.15 -2.53 16 6 C -0.11 -3.07 5.92 30.60 0.18 -2.89 16 7 C -0.13 -5.26 5.54 30.59 0.17 -5.09 16 8 C 0.09 4.02 2.65 30.59 0.08 4.10 16 9 H 0.03 1.39 7.80 -2.38 -0.02 1.37 16 10 O -0.33 -20.37 9.43 -81.94 -0.77 -21.14 16 11 C -0.37 -22.68 9.77 67.92 0.66 -22.02 16 12 H 0.07 3.91 7.64 -2.91 -0.02 3.89 16 13 C -0.05 -2.85 5.49 84.83 0.47 -2.38 16 14 N -0.94 -62.10 13.67 21.61 0.30 -61.80 16 15 Si 1.00 46.55 29.55 68.60 2.03 48.58 16 16 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 C -0.10 -3.94 4.86 30.59 0.15 -3.79 16 20 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.06 1.02 6.57 -2.38 -0.02 1.01 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.09 1.72 6.56 -2.39 -0.02 1.70 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -72.16 265.02 5.29 -66.87 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.04 Total: 8.67 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 2.70 Total: -41.17 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.30 Total: -61.80 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.77 Total: -21.14 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -72.16 5.29 -66.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070564458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.893 kcal (2) G-P(sol) polarization free energy of solvation -72.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds