Wall clock time and date at job start Mon Mar 30 2020 02:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 H 1.08999 * 109.46812 * 55.00522 * 3 2 1 5 5 C 1.52995 * 109.47287 * 295.00177 * 3 2 1 6 6 C 1.53004 * 109.47057 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.46816 * 60.00591 * 6 5 3 8 8 C 1.53000 * 109.47301 * 299.99448 * 7 6 5 9 9 H 1.08994 * 109.47533 * 180.02562 * 8 7 6 10 10 O 1.42904 * 109.47141 * 300.00627 * 8 7 6 11 11 C 1.34927 * 116.99796 * 269.99689 * 10 8 7 12 12 H 1.07994 * 119.99967 * 359.97438 * 11 10 8 13 13 C 1.38635 * 119.99870 * 180.02562 * 11 10 8 14 14 N 1.31582 * 119.99884 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99902 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99861 * 15 13 11 17 17 H 1.48503 * 109.47261 * 150.00041 * 15 13 11 18 18 H 1.48500 * 109.47454 * 30.00034 * 15 13 11 19 19 C 1.53000 * 109.46965 * 60.00216 * 8 7 6 20 20 H 1.08991 * 109.47485 * 59.99739 * 1 2 3 21 21 H 1.09001 * 109.47229 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46602 * 299.99401 * 1 2 3 23 23 H 1.09006 * 109.46970 * 240.00204 * 2 1 3 24 24 H 1.09000 * 109.47706 * 120.00386 * 2 1 3 25 25 H 1.09008 * 109.47108 * 59.99866 * 5 3 2 26 26 H 1.08999 * 109.47476 * 299.99938 * 5 3 2 27 27 H 1.09001 * 109.47283 * 299.99884 * 6 5 3 28 28 H 1.09007 * 109.46803 * 180.02562 * 6 5 3 29 29 H 1.09004 * 109.46752 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.47398 * 59.99972 * 7 6 5 31 31 H 0.96997 * 119.99607 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.46812 * 60.00042 * 19 8 7 33 33 H 1.09002 * 109.47300 * 179.97438 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1447 3.5693 -1.3069 7 6 3.6695 3.5715 -1.1811 8 6 4.0744 2.8875 0.1262 9 1 5.1606 2.8895 0.2161 10 8 3.5042 3.5938 1.2299 11 6 4.2386 4.5919 1.7637 12 1 5.2109 4.8247 1.3554 13 6 3.7455 5.3178 2.8369 14 7 4.4616 6.2914 3.3572 15 14 2.0640 4.9145 3.5435 16 1 1.0280 5.7168 2.8447 17 1 2.0457 5.2373 4.9930 18 1 1.7814 3.4690 3.3548 19 6 3.5648 1.4448 0.1260 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 0.5488 2.1253 -1.3968 26 1 2.0698 1.5876 -2.1491 27 1 1.7098 4.1081 -0.4651 28 1 1.8559 4.0568 -2.2382 29 1 4.0325 4.5993 -1.1813 30 1 4.1044 3.0328 -2.0229 31 1 4.1167 6.7990 4.1083 32 1 3.9997 0.9061 -0.7159 33 1 3.8536 0.9573 1.0571 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070564460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:12 Heat of formation + Delta-G solvation = -70.348483 kcal Electronic energy + Delta-G solvation = -13397.566023 eV Core-core repulsion = 11229.447426 eV Total energy + Delta-G solvation = -2168.118597 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.73403 -35.73001 -33.00360 -31.66050 -29.75185 -28.31030 -24.36739 -23.30063 -21.85976 -20.17303 -18.93585 -17.48945 -15.30691 -15.11452 -14.56775 -13.94090 -13.84026 -13.36525 -13.00856 -12.54427 -12.28882 -12.02989 -11.78557 -11.36911 -11.15127 -11.00075 -10.92539 -10.69820 -10.46086 -10.17291 -9.97870 -9.94612 -9.42566 -9.17844 -9.03637 -8.08618 -5.93123 -3.58288 3.45088 3.48208 3.64819 4.61604 5.04498 5.10403 5.13569 5.36581 5.39804 5.55354 5.61640 5.64503 5.86229 5.92628 5.95906 6.07038 6.09238 6.16091 6.16891 6.25466 6.38079 6.43214 6.48350 6.52237 6.81302 6.84907 6.87802 7.01010 7.09389 7.99543 8.44449 9.48079 10.06457 11.20350 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036316 B = 0.012273 C = 0.010607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.829256 B = 2280.859171 C = 2639.145919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.085 4.085 4 H 0.080 0.920 5 C -0.108 4.108 6 C -0.112 4.112 7 C -0.136 4.136 8 C 0.107 3.893 9 H 0.044 0.956 10 O -0.320 6.320 11 C -0.349 4.349 12 H 0.076 0.924 13 C 0.040 3.960 14 N -0.918 5.918 15 Si 0.903 3.097 16 H -0.283 1.283 17 H -0.293 1.293 18 H -0.264 1.264 19 C -0.107 4.107 20 H 0.055 0.945 21 H 0.046 0.954 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.267 0.733 32 H 0.060 0.940 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 -10.384 -8.349 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.104 4.104 4 H 0.099 0.901 5 C -0.146 4.146 6 C -0.150 4.150 7 C -0.174 4.174 8 C 0.048 3.952 9 H 0.062 0.938 10 O -0.235 6.235 11 C -0.428 4.428 12 H 0.094 0.906 13 C -0.156 4.156 14 N -0.564 5.564 15 Si 0.731 3.269 16 H -0.209 1.209 17 H -0.220 1.220 18 H -0.188 1.188 19 C -0.145 4.145 20 H 0.074 0.926 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.073 -10.337 -8.161 14.503 hybrid contribution -0.450 0.064 0.287 0.538 sum -6.523 -10.273 -7.874 14.494 Atomic orbital electron populations 1.21814 0.96419 1.00788 1.01958 1.21587 0.95519 0.97247 1.01306 1.21101 0.95837 0.94750 0.98678 0.90138 1.21580 0.99731 0.96254 0.97024 1.21379 0.96267 0.96191 1.01134 1.22006 0.96187 1.01352 0.97879 1.21639 0.95861 0.90525 0.87163 0.93817 1.85270 1.44715 1.48145 1.45415 1.20462 1.00493 1.08543 1.13272 0.90584 1.24291 0.98768 0.95895 0.96615 1.69692 1.38129 1.22408 1.26156 0.86204 0.84003 0.79496 0.77159 1.20906 1.21986 1.18845 1.21651 0.95485 0.96261 1.01071 0.92642 0.93441 0.92778 0.92585 0.92313 0.92616 0.92946 0.90960 0.93368 0.91823 0.93057 0.92314 0.92149 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 37.15 0.36 -1.48 16 2 C -0.12 -1.59 5.40 -26.73 -0.14 -1.73 16 3 C -0.09 -1.39 2.04 -90.62 -0.19 -1.57 16 4 H 0.08 1.57 7.68 -51.93 -0.40 1.17 16 5 C -0.11 -1.63 4.96 -26.73 -0.13 -1.76 16 6 C -0.11 -1.94 5.78 -26.73 -0.15 -2.10 16 7 C -0.14 -2.52 5.63 -26.73 -0.15 -2.67 16 8 C 0.11 2.23 2.96 -26.73 -0.08 2.15 16 9 H 0.04 0.94 7.80 -51.93 -0.41 0.53 16 10 O -0.32 -8.27 6.90 -16.50 -0.11 -8.39 16 11 C -0.35 -10.28 10.23 30.88 0.32 -9.97 16 12 H 0.08 2.35 7.88 -52.49 -0.41 1.94 16 13 C 0.04 1.22 5.49 -17.51 -0.10 1.12 16 14 N -0.92 -28.86 13.96 55.48 0.77 -28.08 16 15 Si 0.90 23.52 28.61 -169.99 -4.86 18.65 16 16 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 18 H -0.26 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.11 -1.85 4.95 -26.73 -0.13 -1.98 16 20 H 0.05 0.64 6.56 -51.93 -0.34 0.30 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.77 6.57 -51.92 -0.34 0.43 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.46 7.68 -51.93 -0.40 1.06 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.27 7.89 8.31 -40.82 -0.34 7.55 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 261.82 15.07 3.95 3.95 Total: -1.00 -30.96 261.82 -6.32 -37.28 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -5.66 Total: -3.42 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -0.40 Total: -19.99 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: 0.77 Total: -28.08 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.11 Total: -8.39 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.86 Total: 18.65 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.96 -6.32 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070564460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.067 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds