Wall clock time and date at job start Mon Mar 30 2020 02:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47367 * 2 1 4 4 H 1.09004 * 109.47038 * 304.99402 * 3 2 1 5 5 C 1.52999 * 109.47254 * 64.99527 * 3 2 1 6 6 C 1.53001 * 109.47068 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47224 * 300.00007 * 6 5 3 8 8 C 1.52999 * 109.47103 * 60.00015 * 7 6 5 9 9 H 1.09003 * 109.47053 * 59.99909 * 8 7 6 10 10 O 1.42900 * 109.47088 * 180.02562 * 8 7 6 11 11 C 1.34923 * 117.00305 * 269.99997 * 10 8 7 12 12 H 1.08004 * 119.99584 * 359.97438 * 11 10 8 13 13 C 1.38630 * 120.00219 * 180.02562 * 11 10 8 14 14 N 1.31584 * 120.00278 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00179 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 59.99657 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99838 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 C 1.53001 * 109.47068 * 300.00080 * 8 7 6 20 20 H 1.08995 * 109.47247 * 300.00369 * 1 2 3 21 21 H 1.09006 * 109.46866 * 60.00301 * 1 2 3 22 22 H 1.08991 * 109.47096 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47664 * 239.99916 * 2 1 3 24 24 H 1.09006 * 109.46866 * 119.99699 * 2 1 3 25 25 H 1.08993 * 109.47012 * 60.00440 * 5 3 2 26 26 H 1.08993 * 109.47230 * 300.00120 * 5 3 2 27 27 H 1.08996 * 109.47182 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.47405 * 59.99764 * 6 5 3 29 29 H 1.09004 * 109.46732 * 300.00170 * 7 6 5 30 30 H 1.08998 * 109.47507 * 180.02562 * 7 6 5 31 31 H 0.97001 * 119.99415 * 0.02562 * 14 13 11 32 32 H 1.08996 * 109.47182 * 179.97438 * 19 8 7 33 33 H 1.08994 * 109.47480 * 300.00232 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1448 3.5693 1.3070 7 6 3.6696 3.5716 1.1810 8 6 4.0744 2.8875 -0.1262 9 1 3.6395 3.4262 -0.9681 10 8 5.4986 2.8891 -0.2436 11 6 6.0610 3.9479 -0.8625 12 1 5.4385 4.7443 -1.2430 13 6 7.4378 4.0131 -1.0109 14 7 8.1962 3.0426 -0.5478 15 14 8.2166 5.4793 -1.8671 16 1 7.8761 6.7220 -1.1288 17 1 7.7012 5.5723 -3.2567 18 1 9.6916 5.3097 -1.8961 19 6 3.5649 1.4448 -0.1259 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.0698 1.5876 2.1491 26 1 0.5490 2.1253 1.3968 27 1 1.8568 4.0565 2.2384 28 1 1.7099 4.1081 0.4651 29 1 4.1044 3.0328 2.0229 30 1 4.0327 4.5993 1.1813 31 1 7.7918 2.2814 -0.1028 32 1 3.8529 0.9576 -1.0574 33 1 3.9997 0.9060 0.7159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070564461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:13 Heat of formation + Delta-G solvation = -79.149429 kcal Electronic energy + Delta-G solvation = -13054.544436 eV Core-core repulsion = 10886.044201 eV Total energy + Delta-G solvation = -2168.500235 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.70381 -35.92013 -33.22353 -31.52573 -29.59346 -28.15029 -24.10053 -23.30369 -21.85919 -20.21795 -19.39308 -17.78465 -15.41046 -14.72834 -14.50020 -14.18364 -13.75238 -13.54096 -13.33346 -12.85850 -12.76811 -12.07865 -11.75477 -11.18643 -11.08262 -10.92543 -10.70428 -10.57026 -10.39908 -10.20570 -10.10876 -9.80122 -9.66768 -9.26183 -9.02040 -7.88006 -6.21818 -3.51795 3.43422 3.48424 3.66088 4.47350 4.85247 4.94279 5.07454 5.28753 5.41939 5.48451 5.52458 5.59080 5.75305 5.83088 5.90883 5.93745 6.00790 6.08266 6.09964 6.14385 6.24715 6.34367 6.35470 6.51853 6.66722 6.69051 6.82458 6.99422 7.06028 7.76394 8.92397 9.53152 10.19277 11.26251 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.061497 B = 0.007922 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.196982 B = 3533.737285 C = 3729.576407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.066 0.934 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.138 4.138 8 C 0.108 3.892 9 H 0.036 0.964 10 O -0.313 6.313 11 C -0.443 4.443 12 H 0.051 0.949 13 C -0.010 4.010 14 N -0.917 5.917 15 Si 1.089 2.911 16 H -0.290 1.290 17 H -0.290 1.290 18 H -0.279 1.279 19 C -0.109 4.109 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.274 0.726 32 H 0.061 0.939 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.823 -2.371 1.921 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.102 4.102 4 H 0.085 0.915 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.176 4.176 8 C 0.049 3.951 9 H 0.054 0.946 10 O -0.229 6.229 11 C -0.522 4.522 12 H 0.068 0.932 13 C -0.210 4.210 14 N -0.556 5.556 15 Si 0.917 3.083 16 H -0.217 1.217 17 H -0.216 1.216 18 H -0.204 1.204 19 C -0.146 4.146 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.264 -1.860 1.516 12.497 hybrid contribution -1.736 -0.397 0.422 1.830 sum -14.000 -2.257 1.938 14.313 Atomic orbital electron populations 1.21817 0.96272 1.01075 1.01746 1.21560 0.95389 0.96738 1.01967 1.21138 0.95776 0.95393 0.97930 0.91525 1.21625 0.99716 0.96061 0.97580 1.21512 0.96647 0.96312 1.00910 1.22068 0.93985 1.01538 0.99985 1.21609 0.85006 0.93739 0.94737 0.94550 1.85359 1.15243 1.44191 1.78113 1.21724 0.93103 0.99409 1.37984 0.93169 1.26013 0.91339 1.03926 0.99742 1.70566 1.37815 1.09837 1.37408 0.83191 0.76439 0.73348 0.75367 1.21656 1.21646 1.20358 1.21606 0.93443 0.97490 1.02107 0.92613 0.92933 0.93191 0.92059 0.92091 0.92173 0.92374 0.92627 0.92512 0.92253 0.92097 0.91580 0.92038 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.67 37.16 0.36 -1.21 16 2 C -0.12 -1.48 5.40 -26.73 -0.14 -1.62 16 3 C -0.08 -1.23 2.19 -90.62 -0.20 -1.43 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 5 C -0.11 -1.55 4.96 -26.73 -0.13 -1.68 16 6 C -0.12 -1.78 5.92 -26.73 -0.16 -1.94 16 7 C -0.14 -2.74 5.54 -26.73 -0.15 -2.89 16 8 C 0.11 2.45 2.65 -26.73 -0.07 2.38 16 9 H 0.04 0.84 7.80 -51.93 -0.41 0.43 16 10 O -0.31 -9.13 8.83 -16.49 -0.15 -9.27 16 11 C -0.44 -13.47 9.77 30.88 0.30 -13.17 16 12 H 0.05 1.47 7.65 -52.48 -0.40 1.07 16 13 C -0.01 -0.32 5.49 -17.51 -0.10 -0.42 16 14 N -0.92 -29.91 13.70 55.48 0.76 -29.15 16 15 Si 1.09 26.19 29.92 -169.99 -5.09 21.11 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.11 -2.05 4.85 -26.73 -0.13 -2.18 16 20 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.69 6.56 -51.93 -0.34 0.34 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.27 9.17 7.97 -40.82 -0.33 8.84 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 264.47 15.07 3.99 3.99 Total: -1.00 -32.86 264.47 -6.59 -39.44 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.68 Total: -1.96 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -0.42 Total: -24.16 kcal Atomic # 7 Polarization: -29.91 SS G_CDS: 0.76 Total: -29.15 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.15 Total: -9.27 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -5.09 Total: 21.11 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.86 -6.59 -39.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070564461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.707 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds