Wall clock time and date at job start Mon Mar 30 2020 02:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47367 * 2 1 4 4 H 1.09004 * 109.47038 * 304.99402 * 3 2 1 5 5 C 1.52999 * 109.47254 * 64.99527 * 3 2 1 6 6 C 1.53001 * 109.47068 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47224 * 300.00007 * 6 5 3 8 8 C 1.52999 * 109.47103 * 60.00015 * 7 6 5 9 9 H 1.09003 * 109.47053 * 59.99909 * 8 7 6 10 10 O 1.42900 * 109.47088 * 180.02562 * 8 7 6 11 11 C 1.34923 * 117.00305 * 269.99997 * 10 8 7 12 12 H 1.08004 * 119.99584 * 359.97438 * 11 10 8 13 13 C 1.38630 * 120.00219 * 180.02562 * 11 10 8 14 14 N 1.31584 * 120.00278 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00179 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 59.99657 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99838 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 C 1.53001 * 109.47068 * 300.00080 * 8 7 6 20 20 H 1.08995 * 109.47247 * 300.00369 * 1 2 3 21 21 H 1.09006 * 109.46866 * 60.00301 * 1 2 3 22 22 H 1.08991 * 109.47096 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47664 * 239.99916 * 2 1 3 24 24 H 1.09006 * 109.46866 * 119.99699 * 2 1 3 25 25 H 1.08993 * 109.47012 * 60.00440 * 5 3 2 26 26 H 1.08993 * 109.47230 * 300.00120 * 5 3 2 27 27 H 1.08996 * 109.47182 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.47405 * 59.99764 * 6 5 3 29 29 H 1.09004 * 109.46732 * 300.00170 * 7 6 5 30 30 H 1.08998 * 109.47507 * 180.02562 * 7 6 5 31 31 H 0.97001 * 119.99415 * 0.02562 * 14 13 11 32 32 H 1.08996 * 109.47182 * 179.97438 * 19 8 7 33 33 H 1.08994 * 109.47480 * 300.00232 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1448 3.5693 1.3070 7 6 3.6696 3.5716 1.1810 8 6 4.0744 2.8875 -0.1262 9 1 3.6395 3.4262 -0.9681 10 8 5.4986 2.8891 -0.2436 11 6 6.0610 3.9479 -0.8625 12 1 5.4385 4.7443 -1.2430 13 6 7.4378 4.0131 -1.0109 14 7 8.1962 3.0426 -0.5478 15 14 8.2166 5.4793 -1.8671 16 1 7.8761 6.7220 -1.1288 17 1 7.7012 5.5723 -3.2567 18 1 9.6916 5.3097 -1.8961 19 6 3.5649 1.4448 -0.1259 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.0698 1.5876 2.1491 26 1 0.5490 2.1253 1.3968 27 1 1.8568 4.0565 2.2384 28 1 1.7099 4.1081 0.4651 29 1 4.1044 3.0328 2.0229 30 1 4.0327 4.5993 1.1813 31 1 7.7918 2.2814 -0.1028 32 1 3.8529 0.9576 -1.0574 33 1 3.9997 0.9060 0.7159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070564461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:13 Heat of formation + Delta-G solvation = -99.484926 kcal Electronic energy + Delta-G solvation = -13055.426249 eV Core-core repulsion = 10886.044201 eV Total energy + Delta-G solvation = -2169.382048 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22738 -37.80623 -34.63921 -33.62100 -31.08135 -29.50732 -26.30286 -24.59576 -23.29973 -21.61435 -20.85655 -19.94076 -17.19685 -16.51118 -15.95545 -15.66540 -15.39914 -15.30114 -14.55005 -14.45713 -14.11915 -13.35622 -13.12891 -12.77551 -12.57639 -12.31357 -12.18596 -11.97784 -11.92377 -11.90388 -11.56284 -11.47397 -11.23902 -11.11242 -10.83850 -10.13157 -8.67237 -5.95085 1.49793 1.62283 1.80360 2.50476 3.17105 3.38417 3.72534 3.81415 4.10147 4.13358 4.26052 4.29206 4.44240 4.48199 4.55273 4.66088 4.69027 4.77000 4.96612 4.99187 5.10276 5.11024 5.16784 5.19604 5.29151 5.33568 5.35228 5.43533 5.51185 5.56900 6.45393 7.18598 7.93632 8.81959 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.061497 B = 0.007922 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.196982 B = 3533.737285 C = 3729.576407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.077 4.077 4 H 0.069 0.931 5 C -0.108 4.108 6 C -0.108 4.108 7 C -0.132 4.132 8 C 0.095 3.905 9 H 0.028 0.972 10 O -0.354 6.354 11 C -0.452 4.452 12 H 0.055 0.945 13 C -0.070 4.070 14 N -0.943 5.943 15 Si 1.141 2.859 16 H -0.267 1.267 17 H -0.266 1.266 18 H -0.277 1.277 19 C -0.102 4.102 20 H 0.065 0.935 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.253 0.747 32 H 0.046 0.954 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.902 -1.722 1.921 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.095 4.095 4 H 0.087 0.913 5 C -0.145 4.145 6 C -0.146 4.146 7 C -0.170 4.170 8 C 0.037 3.963 9 H 0.046 0.954 10 O -0.270 6.270 11 C -0.530 4.530 12 H 0.072 0.928 13 C -0.261 4.261 14 N -0.584 5.584 15 Si 0.959 3.041 16 H -0.192 1.192 17 H -0.191 1.191 18 H -0.202 1.202 19 C -0.140 4.140 20 H 0.084 0.916 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.395 -1.223 1.526 14.528 hybrid contribution -1.152 -0.643 0.442 1.391 sum -15.547 -1.866 1.968 15.782 Atomic orbital electron populations 1.21785 0.94058 1.02234 1.02379 1.21532 0.97222 0.94756 1.01916 1.21120 0.92032 0.97481 0.98894 0.91259 1.21635 1.01729 0.94472 0.96713 1.21491 0.92529 0.98079 1.02487 1.21974 0.97787 0.99453 0.97772 1.22040 0.81950 0.96483 0.95847 0.95420 1.85308 1.19069 1.44332 1.78336 1.22118 0.93756 0.99713 1.37445 0.92752 1.27997 0.92341 1.06067 0.99723 1.70729 1.37914 1.10359 1.39439 0.82602 0.75525 0.70367 0.75587 1.19164 1.19120 1.20229 1.21598 0.96879 0.94589 1.00963 0.91610 0.92621 0.91887 0.92548 0.91905 0.92071 0.88965 0.90201 0.91838 0.93252 0.94288 0.93908 0.93550 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.67 71.98 0.70 -1.84 16 2 C -0.12 -2.64 5.40 30.59 0.17 -2.47 16 3 C -0.08 -2.12 2.19 -10.79 -0.02 -2.14 16 4 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 5 C -0.11 -2.65 4.96 30.59 0.15 -2.50 16 6 C -0.11 -3.07 5.92 30.60 0.18 -2.89 16 7 C -0.13 -5.27 5.54 30.59 0.17 -5.10 16 8 C 0.09 4.40 2.65 30.59 0.08 4.48 16 9 H 0.03 1.31 7.80 -2.39 -0.02 1.29 16 10 O -0.35 -21.43 8.83 -81.92 -0.72 -22.16 16 11 C -0.45 -28.12 9.77 67.91 0.66 -27.46 16 12 H 0.05 3.24 7.65 -2.91 -0.02 3.21 16 13 C -0.07 -4.31 5.49 84.82 0.47 -3.85 16 14 N -0.94 -63.31 13.70 21.61 0.30 -63.02 16 15 Si 1.14 52.36 29.92 68.60 2.05 54.41 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 19 C -0.10 -3.93 4.85 30.60 0.15 -3.78 16 20 H 0.06 1.01 6.56 -2.39 -0.02 0.99 16 21 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.72 6.56 -2.39 -0.02 1.71 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.25 17.67 7.97 -92.71 -0.74 16.94 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -73.19 264.47 5.40 -67.79 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.08 Total: 10.52 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 2.70 Total: -47.55 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: 0.30 Total: -63.02 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.72 Total: -22.16 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 2.05 Total: 54.41 kcal Total: -73.19 5.40 -67.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070564461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.697 kcal (2) G-P(sol) polarization free energy of solvation -73.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds