Wall clock time and date at job start Mon Mar 30 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46937 * 2 1 4 4 C 1.42904 * 113.99813 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.01890 * 29.92888 * 4 3 2 6 6 C 1.54268 * 110.02705 * 268.54480 * 4 3 2 7 7 C 1.54897 * 104.19359 * 217.10495 * 6 4 3 8 8 C 1.54882 * 102.74839 * 37.94171 * 7 6 4 9 9 C 1.53876 * 110.03436 * 151.37842 * 4 3 2 10 10 H 1.08994 * 110.02975 * 238.56495 * 9 4 3 11 11 C 1.53000 * 110.02986 * 359.94672 * 9 4 3 12 12 C 1.50697 * 109.46936 * 185.00015 * 11 9 4 13 13 H 1.08005 * 119.99879 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99960 * 180.02562 * 12 11 9 15 15 N 1.31512 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99763 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47129 * 59.99769 * 16 14 12 18 18 H 1.48500 * 109.46881 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47192 * 299.99827 * 16 14 12 20 20 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46951 * 300.00013 * 1 2 3 22 22 H 1.09001 * 109.47394 * 59.99778 * 1 2 3 23 23 H 1.08997 * 109.46909 * 240.00035 * 2 1 3 24 24 H 1.09004 * 109.47125 * 119.99759 * 2 1 3 25 25 H 1.08999 * 110.49069 * 98.43011 * 6 4 3 26 26 H 1.08999 * 110.60474 * 335.83838 * 6 4 3 27 27 H 1.08994 * 110.75328 * 156.26004 * 7 6 4 28 28 H 1.09004 * 110.75215 * 279.62712 * 7 6 4 29 29 H 1.09003 * 110.48391 * 80.73538 * 8 7 6 30 30 H 1.09004 * 110.48801 * 203.38079 * 8 7 6 31 31 H 1.09000 * 109.47513 * 305.00429 * 11 9 4 32 32 H 1.09009 * 109.47087 * 65.00163 * 11 9 4 33 33 H 0.97008 * 119.99293 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8727 0.6049 -0.5119 6 6 3.9553 1.5383 1.4481 7 6 5.1352 2.5389 1.3715 8 6 4.6238 3.5935 0.3590 9 6 3.8559 2.7669 -0.6931 10 1 4.5046 2.5463 -1.5407 11 6 2.6202 3.5356 -1.1653 12 6 3.0522 4.7489 -1.9478 13 1 4.1030 4.9517 -2.0932 14 6 2.1059 5.6007 -2.4770 15 7 0.8264 5.3540 -2.2994 16 14 2.6414 7.1044 -3.4475 17 1 3.4371 6.6755 -4.6257 18 1 1.4421 7.8506 -3.9058 19 1 3.4706 7.9820 -2.5830 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 4.3050 0.5610 1.7806 26 1 3.1803 1.9129 2.1169 27 1 5.3189 2.9946 2.3444 28 1 6.0339 2.0484 0.9975 29 1 3.9556 4.3011 0.8500 30 1 5.4612 4.1160 -0.1034 31 1 2.0121 2.8913 -1.8003 32 1 2.0355 3.8500 -0.3007 33 1 0.1607 5.9536 -2.6715 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075555432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:45 Heat of formation + Delta-G solvation = -93.661536 kcal Electronic energy + Delta-G solvation = -13128.413691 eV Core-core repulsion = 10959.284165 eV Total energy + Delta-G solvation = -2169.129527 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.11609 -37.17523 -35.01268 -32.09143 -31.80202 -28.33456 -27.57562 -24.18589 -23.62906 -21.58936 -20.35161 -18.56496 -17.46960 -16.63244 -16.34331 -16.27038 -15.29644 -14.67681 -14.44577 -14.03494 -13.71986 -13.38755 -13.17031 -12.91640 -12.63275 -12.47027 -12.15544 -12.12583 -11.92537 -11.79514 -11.43282 -11.29809 -11.00484 -10.82563 -10.49104 -10.22072 -8.12961 -6.24012 1.38588 1.42440 1.49986 2.43072 2.96821 3.18638 3.79154 3.83478 4.11991 4.20706 4.34323 4.45123 4.52055 4.62430 4.71028 4.75650 4.87512 4.90250 5.05351 5.09742 5.11469 5.22260 5.29981 5.35961 5.44428 5.54666 5.61757 5.89295 5.98389 6.33990 6.60412 6.96310 7.43990 8.98507 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032584 B = 0.010830 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.105344 B = 2584.671517 C = 3300.229333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.401 6.401 4 C 0.083 3.917 5 H 0.070 0.930 6 C -0.137 4.137 7 C -0.112 4.112 8 C -0.105 4.105 9 C -0.090 4.090 10 H 0.062 0.938 11 C 0.062 3.938 12 C -0.536 4.536 13 H 0.059 0.941 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.266 1.266 20 H 0.098 0.902 21 H 0.054 0.946 22 H 0.039 0.961 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.062 0.938 31 H -0.018 1.018 32 H -0.019 1.019 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.000 -9.827 6.331 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.321 6.321 4 C 0.026 3.974 5 H 0.088 0.912 6 C -0.174 4.174 7 C -0.150 4.150 8 C -0.143 4.143 9 C -0.109 4.109 10 H 0.080 0.920 11 C 0.025 3.975 12 C -0.575 4.575 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.786 3.214 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.191 1.191 20 H 0.117 0.883 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.000 1.000 32 H -0.001 1.001 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.706 -9.612 6.289 12.825 hybrid contribution -0.233 0.760 -0.729 1.079 sum 5.472 -8.851 5.560 11.798 Atomic orbital electron populations 1.21744 0.93806 1.03092 1.01855 1.22656 0.95976 0.83801 1.00428 1.88150 1.21878 1.27013 1.95009 1.22955 0.80617 0.97529 0.96337 0.91210 1.22831 0.98242 1.00586 0.95779 1.22435 0.97518 0.95810 0.99204 1.22223 0.98485 0.97455 0.96102 1.21929 0.97424 0.94255 0.97251 0.91997 1.18578 0.92341 0.92906 0.93675 1.21755 0.92946 1.09491 1.33259 0.92242 1.26000 0.94917 1.01464 0.97721 1.70152 1.01212 1.39142 1.47009 0.85561 0.77671 0.79033 0.79130 1.19145 1.21000 1.19125 0.88307 0.92684 0.94151 0.93393 0.91803 0.89282 0.92229 0.90243 0.89693 0.94060 0.91913 1.00011 1.00076 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 10.28 71.98 0.74 -3.49 16 2 C 0.05 1.45 6.50 71.98 0.47 1.92 16 3 O -0.40 -16.53 8.11 -148.98 -1.21 -17.73 16 4 C 0.08 3.02 3.35 31.32 0.10 3.12 16 5 H 0.07 2.19 7.82 -2.39 -0.02 2.18 16 6 C -0.14 -3.99 6.55 31.67 0.21 -3.78 16 7 C -0.11 -3.12 6.91 31.89 0.22 -2.90 16 8 C -0.10 -4.00 5.91 31.67 0.19 -3.81 16 9 C -0.09 -3.92 2.87 -10.07 -0.03 -3.95 16 10 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 11 C 0.06 3.53 3.38 29.85 0.10 3.63 16 12 C -0.54 -31.94 8.69 25.60 0.22 -31.72 16 13 H 0.06 3.36 7.72 -2.91 -0.02 3.33 16 14 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 15 N -0.93 -60.07 13.29 21.45 0.28 -59.78 16 16 Si 0.96 46.02 29.54 68.60 2.03 48.05 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 21 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.04 1.78 7.76 -2.39 -0.02 1.76 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H -0.02 -1.17 7.65 -2.39 -0.02 -1.19 16 32 H -0.02 -1.22 7.91 -2.38 -0.02 -1.24 16 33 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -70.36 268.77 4.83 -65.53 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.04 Total: 4.68 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 2.68 Total: -40.74 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.28 Total: -59.78 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.21 Total: -17.73 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -70.36 4.83 -65.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.135 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds