Wall clock time and date at job start Mon Mar 30 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42890 * 109.47380 * 2 1 4 4 C 1.42904 * 114.00149 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.01548 * 330.70006 * 4 3 2 6 6 C 1.53873 * 110.03420 * 92.08960 * 4 3 2 7 7 C 1.54269 * 106.59646 * 119.33490 * 6 4 3 8 8 C 1.54882 * 104.19831 * 23.61137 * 7 6 4 9 9 C 1.54273 * 110.07348 * 209.28077 * 4 3 2 10 10 H 1.09001 * 110.48533 * 335.76280 * 9 4 3 11 11 C 1.52997 * 110.48458 * 98.40305 * 9 4 3 12 12 C 1.50702 * 109.47190 * 185.00077 * 11 9 4 13 13 H 1.07998 * 119.99454 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99663 * 180.02562 * 12 11 9 15 15 N 1.31505 * 120.00630 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99488 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47148 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47199 * 119.99945 * 16 14 12 19 19 H 1.48501 * 109.47222 * 239.99732 * 16 14 12 20 20 H 1.09005 * 109.47364 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47024 * 300.00325 * 1 2 3 22 22 H 1.08996 * 109.47071 * 59.99824 * 1 2 3 23 23 H 1.09006 * 109.47024 * 239.99675 * 2 1 3 24 24 H 1.09005 * 109.47130 * 120.00423 * 2 1 3 25 25 H 1.08996 * 110.03511 * 238.61728 * 6 4 3 26 26 H 1.09002 * 110.03347 * 0.04804 * 6 4 3 27 27 H 1.09000 * 110.48429 * 142.29450 * 7 6 4 28 28 H 1.08998 * 110.48673 * 264.79629 * 7 6 4 29 29 H 1.08998 * 110.75605 * 80.36842 * 8 7 6 30 30 H 1.09002 * 110.75549 * 203.56377 * 8 7 6 31 31 H 1.09005 * 109.47296 * 305.00309 * 11 9 4 32 32 H 1.09005 * 109.47209 * 64.99599 * 11 9 4 33 33 H 0.97000 * 120.00257 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8735 0.5990 0.5003 6 6 3.9516 1.5543 -1.4455 7 6 4.6783 2.9100 -1.5643 8 6 5.0794 3.2549 -0.1086 9 6 3.8593 2.7616 0.7081 10 1 3.0551 3.4967 0.6745 11 6 4.2643 2.4749 2.1554 12 6 4.5599 3.7733 2.8609 13 1 4.4677 4.7094 2.3302 14 6 4.9481 3.7661 4.1839 15 7 5.0598 2.6263 4.8303 16 14 5.3153 5.3756 5.0582 17 1 5.1157 6.5069 4.1172 18 1 4.3998 5.5293 6.2174 19 1 6.7215 5.3701 5.5354 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 4.6470 0.7392 -1.6458 26 1 3.1177 1.5150 -2.1462 27 1 5.5644 2.8141 -2.1917 28 1 4.0071 3.6685 -1.9672 29 1 5.9816 2.7164 0.1814 30 1 5.2177 4.3296 0.0096 31 1 3.4494 1.9614 2.6658 32 1 5.1538 1.8449 2.1658 33 1 5.3326 2.6214 5.7611 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075555436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:47 Heat of formation + Delta-G solvation = -97.655384 kcal Electronic energy + Delta-G solvation = -12956.235077 eV Core-core repulsion = 10786.932364 eV Total energy + Delta-G solvation = -2169.302713 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.11407 -37.30257 -35.06865 -32.04951 -31.97892 -28.41692 -27.61192 -24.23078 -23.64116 -21.33145 -20.71000 -18.68619 -17.64075 -16.72048 -16.40234 -15.96543 -15.45990 -14.67901 -14.43829 -14.05648 -13.66069 -13.63339 -13.22048 -13.03054 -12.76958 -12.40278 -12.24518 -12.06644 -11.89189 -11.86473 -11.44382 -11.32443 -11.10698 -11.09766 -10.55125 -10.26683 -8.19165 -6.29351 1.38907 1.39493 1.52939 2.40759 2.85145 3.13699 3.74904 3.81138 4.09087 4.17919 4.34176 4.44754 4.49569 4.58520 4.69594 4.76333 4.82569 4.90250 5.04370 5.04797 5.09210 5.12620 5.28007 5.33658 5.39850 5.43940 5.56737 5.71729 5.84341 6.26591 6.46273 6.86039 7.39197 8.93049 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035687 B = 0.009292 C = 0.007901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.413343 B = 3012.551584 C = 3542.838325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.403 6.403 4 C 0.086 3.914 5 H 0.048 0.952 6 C -0.136 4.136 7 C -0.113 4.113 8 C -0.105 4.105 9 C -0.079 4.079 10 H 0.055 0.945 11 C 0.039 3.961 12 C -0.531 4.531 13 H 0.059 0.941 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.964 3.036 17 H -0.262 1.262 18 H -0.280 1.280 19 H -0.276 1.276 20 H 0.094 0.906 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.035 0.965 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.061 0.939 31 H -0.021 1.021 32 H -0.007 1.007 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 -3.266 -12.174 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 O -0.323 6.323 4 C 0.028 3.972 5 H 0.066 0.934 6 C -0.174 4.174 7 C -0.150 4.150 8 C -0.142 4.142 9 C -0.098 4.098 10 H 0.074 0.926 11 C 0.002 3.998 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.789 3.211 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.202 1.202 20 H 0.112 0.888 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.080 0.920 31 H -0.003 1.003 32 H 0.012 0.988 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.777 -3.185 -12.025 13.000 hybrid contribution 0.342 0.274 1.124 1.206 sum -3.435 -2.910 -10.901 11.794 Atomic orbital electron populations 1.21744 0.92481 1.03415 1.02556 1.22685 0.96730 0.83481 1.00117 1.87908 1.21674 1.27583 1.95129 1.22957 0.80330 0.97758 0.96155 0.93429 1.22613 1.00600 0.98827 0.95333 1.22301 1.00415 0.96509 0.95789 1.22327 0.96583 1.00625 0.94708 1.22016 0.97341 0.95382 0.95068 0.92624 1.18983 0.93800 0.95577 0.91433 1.21641 1.44921 0.93824 0.96484 0.92242 1.25984 0.95453 1.00006 0.98554 1.70106 1.49107 1.27491 1.10877 0.85413 0.77879 0.79500 0.78357 1.18565 1.20564 1.20159 0.88778 0.93279 0.91489 0.91867 0.94653 0.90247 0.90236 0.89648 0.91221 0.92461 0.92000 1.00300 0.98838 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 10.28 71.98 0.74 -2.69 16 2 C 0.05 1.35 6.50 71.98 0.47 1.82 16 3 O -0.40 -15.11 9.90 -148.98 -1.47 -16.59 16 4 C 0.09 3.21 2.95 31.32 0.09 3.30 16 5 H 0.05 1.86 7.51 -2.39 -0.02 1.84 16 6 C -0.14 -3.90 6.61 31.32 0.21 -3.70 16 7 C -0.11 -3.19 6.83 31.67 0.22 -2.98 16 8 C -0.10 -3.92 5.99 31.88 0.19 -3.73 16 9 C -0.08 -3.52 2.53 -9.72 -0.02 -3.54 16 10 H 0.06 2.61 8.08 -2.39 -0.02 2.59 16 11 C 0.04 2.16 4.32 29.85 0.13 2.29 16 12 C -0.53 -31.13 8.77 25.60 0.22 -30.91 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 15 N -0.94 -58.34 13.29 21.45 0.28 -58.06 16 16 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 21 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.04 1.09 8.10 -2.38 -0.02 1.07 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 2.09 7.96 -2.39 -0.02 2.07 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 2.21 7.97 -2.39 -0.02 2.19 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H -0.02 -1.32 8.14 -2.38 -0.02 -1.34 16 32 H -0.01 -0.39 8.02 -2.38 -0.02 -0.41 16 33 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -66.86 271.24 4.58 -62.28 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.04 Total: 4.80 kcal Atomic # 6 Polarization: -42.54 SS G_CDS: 2.71 Total: -39.83 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.28 Total: -58.06 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -1.47 Total: -16.59 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.86 4.58 -62.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.380 kcal (2) G-P(sol) polarization free energy of solvation -66.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds