Wall clock time and date at job start Mon Mar 30 2020 01:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00395 * 2 1 3 5 5 C 1.52996 * 109.47131 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46972 * 299.99541 * 5 4 2 7 7 C 1.53002 * 109.47128 * 60.00146 * 6 5 4 8 8 C 1.52999 * 109.46626 * 239.99934 * 2 1 3 9 9 H 1.08993 * 109.47839 * 299.99931 * 8 2 1 10 10 C 1.52997 * 109.46991 * 60.00378 * 8 2 1 11 11 C 1.50708 * 109.46993 * 184.99602 * 10 8 2 12 12 H 1.07995 * 120.00281 * 359.97438 * 11 10 8 13 13 C 1.37882 * 119.99899 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99675 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99874 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47237 * 59.99867 * 15 13 11 17 17 H 1.48503 * 109.47123 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47099 * 299.99851 * 15 13 11 19 19 H 1.09001 * 109.46801 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46998 * 299.99473 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99764 * 1 2 3 22 22 H 0.96696 * 113.99976 * 60.00990 * 3 2 1 23 23 H 1.09001 * 109.47289 * 299.99953 * 4 2 1 24 24 H 1.09004 * 109.47261 * 59.99697 * 4 2 1 25 25 H 1.08996 * 109.47134 * 180.02562 * 5 4 2 26 26 H 1.08992 * 109.47534 * 59.99520 * 5 4 2 27 27 H 1.08996 * 109.47407 * 300.00487 * 6 5 4 28 28 H 1.09002 * 109.47070 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47600 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.47006 * 59.99907 * 7 6 5 31 31 H 1.09000 * 109.47325 * 304.99591 * 10 8 2 32 32 H 1.09006 * 109.47500 * 64.99680 * 10 8 2 33 33 H 0.97004 * 119.99528 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2495 6 6 4.0805 -1.4417 0.0002 7 6 3.5705 -0.7204 -1.2490 8 6 2.0399 -0.7213 -1.2493 9 1 1.6767 -1.7489 -1.2493 10 6 1.5299 0.0000 -2.4984 11 6 1.9286 -0.7783 -3.7259 12 1 2.4899 -1.6954 -3.6251 13 6 1.5776 -0.3189 -4.9776 14 7 0.8944 0.7982 -5.1003 15 14 2.0711 -1.2839 -6.4989 16 1 1.4779 -2.6438 -6.4365 17 1 1.5762 -0.5838 -7.7114 18 1 3.5509 -1.3917 -6.5583 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.7211 1.8652 0.7651 23 1 1.6767 -0.2076 2.1392 24 1 1.6767 -1.7490 1.2491 25 1 3.9333 -1.2350 2.1392 26 1 3.9330 0.3069 1.2497 27 1 3.7175 -2.4694 -0.0001 28 1 5.1705 -1.4417 0.0007 29 1 3.9345 -1.2337 -2.1391 30 1 3.9335 0.3074 -1.2488 31 1 0.4436 0.0783 -2.4548 32 1 1.9646 0.9986 -2.5444 33 1 0.6472 1.1212 -5.9810 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075555464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:44 Heat of formation + Delta-G solvation = -85.925518 kcal Electronic energy + Delta-G solvation = -13484.715280 eV Core-core repulsion = 11315.921212 eV Total energy + Delta-G solvation = -2168.794068 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.14158 -34.63200 -33.30659 -31.29002 -30.63164 -27.08795 -25.51265 -23.22356 -21.08296 -20.12197 -18.92863 -16.26215 -15.71955 -14.91752 -14.29932 -14.19179 -13.74236 -13.23984 -12.83739 -12.31774 -11.90493 -11.77481 -11.48024 -11.33845 -11.03790 -10.88628 -10.71894 -10.62099 -10.28629 -10.08380 -9.68945 -9.63702 -9.33207 -8.76300 -8.69508 -8.21560 -5.89244 -3.90060 3.38271 3.42576 3.44972 4.53449 4.82532 5.15353 5.24816 5.30868 5.45932 5.66861 5.71907 5.84093 5.96295 6.02772 6.07524 6.22842 6.27575 6.34589 6.40633 6.61779 6.67863 6.72707 6.84439 7.11730 7.24940 7.33585 7.82662 8.02684 8.17553 8.28754 8.55804 9.17342 9.72127 11.21952 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046328 B = 0.010565 C = 0.009355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.236128 B = 2649.594375 C = 2992.326658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.133 3.867 3 O -0.545 6.545 4 C -0.143 4.143 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.101 4.101 8 C -0.064 4.064 9 H 0.062 0.938 10 C 0.031 3.969 11 C -0.515 4.515 12 H 0.053 0.947 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 H 0.058 0.942 20 H 0.043 0.957 21 H 0.076 0.924 22 H 0.358 0.642 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.024 0.976 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -2.333 11.777 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.093 3.907 3 O -0.349 6.349 4 C -0.180 4.180 5 C -0.149 4.149 6 C -0.159 4.159 7 C -0.139 4.139 8 C -0.082 4.082 9 H 0.080 0.920 10 C -0.006 4.006 11 C -0.554 4.554 12 H 0.071 0.929 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.203 1.203 19 H 0.077 0.923 20 H 0.062 0.938 21 H 0.095 0.905 22 H 0.203 0.797 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.256 -2.422 11.071 11.555 hybrid contribution -0.112 -0.378 -0.338 0.519 sum 2.144 -2.800 10.733 11.297 Atomic orbital electron populations 1.22525 0.96637 1.02214 1.02124 1.21329 0.91829 0.82253 0.95302 1.86708 1.76705 1.23333 1.48154 1.22236 0.96650 1.01146 0.98009 1.21418 0.95192 1.00975 0.97330 1.21611 0.99326 0.99099 0.95823 1.21446 0.95961 1.00496 0.95989 1.21184 0.95013 0.97947 0.94082 0.91973 1.19125 0.96021 0.95914 0.89552 1.21280 1.34583 1.08182 0.91320 0.92865 1.25003 0.95462 0.95070 0.98934 1.69968 1.39106 1.21158 1.23282 0.86739 0.78872 0.80113 0.82737 1.20401 1.21412 1.20341 0.92268 0.93780 0.90484 0.79749 0.92839 0.91674 0.93310 0.91690 0.92870 0.93015 0.91515 0.91962 0.96498 0.95727 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.47 37.16 0.31 -2.64 16 2 C 0.13 2.34 0.66 -90.62 -0.06 2.28 16 3 O -0.55 -9.82 11.05 -35.23 -0.39 -10.20 16 4 C -0.14 -2.06 4.92 -26.73 -0.13 -2.19 16 5 C -0.11 -1.60 5.78 -26.73 -0.15 -1.75 16 6 C -0.12 -1.93 5.92 -26.73 -0.16 -2.09 16 7 C -0.10 -2.03 4.87 -26.70 -0.13 -2.16 16 8 C -0.06 -1.35 1.50 -90.59 -0.14 -1.49 16 9 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 10 C 0.03 0.81 4.02 -27.88 -0.11 0.70 16 11 C -0.52 -14.76 8.41 -34.43 -0.29 -15.05 16 12 H 0.05 1.48 7.06 -52.49 -0.37 1.11 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 15 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.08 1.49 6.32 -51.93 -0.33 1.16 16 22 H 0.36 4.75 9.04 45.56 0.41 5.16 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.96 7.68 -51.93 -0.40 0.56 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 30 H 0.06 1.32 7.68 -51.93 -0.40 0.93 16 31 H 0.02 0.47 6.17 -51.93 -0.32 0.15 16 32 H 0.02 0.72 7.84 -51.93 -0.41 0.31 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 257.39 15.07 3.88 3.88 Total: -1.00 -31.08 257.39 -6.44 -37.52 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.69 Total: 1.37 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -0.95 Total: -22.85 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.74 Total: -26.79 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.39 Total: -10.20 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.08 -6.44 -37.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.407 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds