Wall clock time and date at job start Mon Mar 30 2020 01:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00395 * 2 1 3 5 5 C 1.52996 * 109.47131 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46972 * 299.99541 * 5 4 2 7 7 C 1.53002 * 109.47128 * 60.00146 * 6 5 4 8 8 C 1.52999 * 109.46626 * 239.99934 * 2 1 3 9 9 H 1.08993 * 109.47839 * 299.99931 * 8 2 1 10 10 C 1.52997 * 109.46991 * 60.00378 * 8 2 1 11 11 C 1.50708 * 109.46993 * 184.99602 * 10 8 2 12 12 H 1.07995 * 120.00281 * 359.97438 * 11 10 8 13 13 C 1.37882 * 119.99899 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99675 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99874 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47237 * 59.99867 * 15 13 11 17 17 H 1.48503 * 109.47123 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47099 * 299.99851 * 15 13 11 19 19 H 1.09001 * 109.46801 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46998 * 299.99473 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99764 * 1 2 3 22 22 H 0.96696 * 113.99976 * 60.00990 * 3 2 1 23 23 H 1.09001 * 109.47289 * 299.99953 * 4 2 1 24 24 H 1.09004 * 109.47261 * 59.99697 * 4 2 1 25 25 H 1.08996 * 109.47134 * 180.02562 * 5 4 2 26 26 H 1.08992 * 109.47534 * 59.99520 * 5 4 2 27 27 H 1.08996 * 109.47407 * 300.00487 * 6 5 4 28 28 H 1.09002 * 109.47070 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47600 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.47006 * 59.99907 * 7 6 5 31 31 H 1.09000 * 109.47325 * 304.99591 * 10 8 2 32 32 H 1.09006 * 109.47500 * 64.99680 * 10 8 2 33 33 H 0.97004 * 119.99528 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2495 6 6 4.0805 -1.4417 0.0002 7 6 3.5705 -0.7204 -1.2490 8 6 2.0399 -0.7213 -1.2493 9 1 1.6767 -1.7489 -1.2493 10 6 1.5299 0.0000 -2.4984 11 6 1.9286 -0.7783 -3.7259 12 1 2.4899 -1.6954 -3.6251 13 6 1.5776 -0.3189 -4.9776 14 7 0.8944 0.7982 -5.1003 15 14 2.0711 -1.2839 -6.4989 16 1 1.4779 -2.6438 -6.4365 17 1 1.5762 -0.5838 -7.7114 18 1 3.5509 -1.3917 -6.5583 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.7211 1.8652 0.7651 23 1 1.6767 -0.2076 2.1392 24 1 1.6767 -1.7490 1.2491 25 1 3.9333 -1.2350 2.1392 26 1 3.9330 0.3069 1.2497 27 1 3.7175 -2.4694 -0.0001 28 1 5.1705 -1.4417 0.0007 29 1 3.9345 -1.2337 -2.1391 30 1 3.9335 0.3074 -1.2488 31 1 0.4436 0.0783 -2.4548 32 1 1.9646 0.9986 -2.5444 33 1 0.6472 1.1212 -5.9810 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075555464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:44 Heat of formation + Delta-G solvation = -106.971413 kcal Electronic energy + Delta-G solvation = -13485.627898 eV Core-core repulsion = 11315.921212 eV Total energy + Delta-G solvation = -2169.706686 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.56850 -36.10861 -35.25614 -33.07715 -32.05505 -28.84940 -27.08074 -25.06915 -22.61664 -21.54414 -20.48580 -18.44432 -17.10848 -16.61352 -16.07616 -15.59521 -15.04292 -14.84007 -14.52849 -13.91970 -13.62389 -13.35308 -13.16458 -12.82609 -12.65464 -12.52335 -12.38629 -12.17856 -11.89180 -11.60084 -11.41184 -11.33630 -11.10233 -10.58087 -10.44079 -10.23992 -8.15357 -6.24940 1.37767 1.41268 1.48821 2.41968 3.16797 3.53389 3.90048 3.96305 4.03992 4.33725 4.35896 4.53723 4.62339 4.73005 4.80826 4.88319 4.96504 5.06097 5.12453 5.22762 5.27895 5.36193 5.39658 5.50590 5.56540 5.59382 5.69564 5.90516 5.98108 6.32624 6.91856 7.14433 7.42506 8.96251 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046328 B = 0.010565 C = 0.009355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.236128 B = 2649.594375 C = 2992.326658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.133 3.867 3 O -0.570 6.570 4 C -0.134 4.134 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.098 4.098 8 C -0.063 4.063 9 H 0.062 0.938 10 C 0.042 3.958 11 C -0.534 4.534 12 H 0.058 0.942 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.960 3.040 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.269 1.269 19 H 0.066 0.934 20 H 0.078 0.922 21 H 0.037 0.963 22 H 0.379 0.621 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.039 0.961 31 H -0.008 1.008 32 H -0.018 1.018 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 -3.775 13.397 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.092 3.908 3 O -0.377 6.377 4 C -0.172 4.172 5 C -0.147 4.147 6 C -0.153 4.153 7 C -0.135 4.135 8 C -0.082 4.082 9 H 0.080 0.920 10 C 0.005 3.995 11 C -0.572 4.572 12 H 0.076 0.924 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.785 3.215 16 H -0.190 1.190 17 H -0.209 1.209 18 H -0.194 1.194 19 H 0.085 0.915 20 H 0.097 0.903 21 H 0.056 0.944 22 H 0.227 0.773 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.011 0.989 32 H 0.001 0.999 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.871 -3.867 12.716 13.597 hybrid contribution -0.320 0.134 -0.849 0.917 sum 2.551 -3.733 11.867 12.699 Atomic orbital electron populations 1.22473 0.96208 1.02623 1.01851 1.21252 0.92142 0.82260 0.95107 1.86659 1.77077 1.24006 1.49961 1.22165 0.96694 1.01434 0.96912 1.21423 0.95046 1.00761 0.97422 1.21567 1.00267 0.99131 0.94336 1.21345 0.95106 0.99491 0.97590 1.21074 0.95865 0.97613 0.93624 0.91995 1.18927 0.94222 0.94207 0.92172 1.21712 1.34435 1.08521 0.92500 0.92363 1.25972 0.95339 0.96111 1.02643 1.70122 1.40335 1.22955 1.24169 0.85580 0.78868 0.78877 0.78214 1.19030 1.20929 1.19376 0.91524 0.90288 0.94436 0.77294 0.89752 0.90744 0.90098 0.92330 0.91862 0.91532 0.93976 0.94178 0.98940 0.99935 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.65 8.47 71.98 0.61 -5.04 16 2 C 0.13 4.51 0.66 -10.79 -0.01 4.50 16 3 O -0.57 -20.34 11.05 -148.98 -1.65 -21.98 16 4 C -0.13 -3.38 4.92 30.59 0.15 -3.23 16 5 C -0.11 -2.73 5.78 30.59 0.18 -2.55 16 6 C -0.12 -3.42 5.92 30.60 0.18 -3.24 16 7 C -0.10 -3.94 4.87 30.61 0.15 -3.79 16 8 C -0.06 -2.71 1.50 -10.78 -0.02 -2.73 16 9 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 10 C 0.04 2.32 4.02 29.85 0.12 2.44 16 11 C -0.53 -31.54 8.41 25.60 0.22 -31.32 16 12 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 13 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 14 N -0.94 -59.42 13.29 21.45 0.28 -59.14 16 15 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 19 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 20 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 21 H 0.04 1.49 6.32 -2.39 -0.02 1.48 16 22 H 0.38 9.47 9.04 -74.06 -0.67 8.80 16 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.56 7.68 -2.39 -0.02 1.54 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.84 6.95 -2.39 -0.02 1.83 16 30 H 0.04 1.75 7.68 -2.38 -0.02 1.73 16 31 H -0.01 -0.46 6.17 -2.39 -0.01 -0.47 16 32 H -0.02 -1.12 7.84 -2.38 -0.02 -1.14 16 33 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -69.74 257.39 3.11 -66.63 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.40 Total: 11.26 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 2.04 Total: -44.71 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.28 Total: -59.14 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.65 Total: -21.98 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -69.74 3.11 -66.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.340 kcal (2) G-P(sol) polarization free energy of solvation -69.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds